genome.fa.s6859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006859.1 Hibiscus syriacus cultivar Beakdansim tig00017450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77855

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2075--2133	29	2.0	29	84	12	77	37	13	6	42	1.71
2221--2512	62	4.6	62	79	5	289	27	23	14	34	1.93
2555--3236	137	5.0	136	86	2	918	31	25	16	26	1.97
2555--3236	275	2.5	274	88	1	1001	31	25	16	26	1.97
3265--3639	47	7.4	47	68	17	173	28	22	16	33	1.95
3262--3639	102	3.7	102	86	0	531	27	22	16	33	1.95
3317--3607	55	5.6	51	70	14	170	29	20	17	32	1.95
3866--3908	3	14.3	3	90	9	70	34	0	2	62	1.08
5164--5194	15	2.1	15	93	0	53	29	0	0	70	0.87
6759--6799	3	13.7	3	94	0	73	31	2	0	65	1.05
12344--12373	2	15.0	2	100	0	60	50	0	0	50	1.00
18515--18566	21	2.5	21	81	3	61	38	19	25	17	1.93
18555--18648	20	4.7	20	80	7	100	34	24	18	23	1.96
19677--19803	33	3.8	33	88	4	202	42	18	22	15	1.89
19678--19803	66	1.9	66	98	0	243	42	19	23	15	1.89
20147--20245	33	3.0	33	89	1	144	39	26	23	11	1.88
20122--20301	19	9.8	19	76	14	164	45	22	21	11	1.84
20217--20301	39	2.2	38	97	2	161	49	22	17	10	1.77
20882--20934	20	2.7	20	93	0	88	26	20	28	24	1.99
20943--20996	20	2.7	20	97	0	99	25	18	24	31	1.97
20883--20999	61	1.9	61	85	0	162	23	17	24	33	1.97
20883--21017	61	2.2	61	81	2	155	22	20	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21067--21107	21	2.0	21	85	0	55	34	31	17	17	1.93
23850--23894	13	3.5	13	87	0	72	15	44	22	17	1.86
23828--23873	18	2.6	18	92	0	74	15	52	21	10	1.73
23834--23886	18	3.2	18	72	25	62	15	49	20	15	1.80
26394--26475	24	3.5	24	84	3	112	26	18	19	35	1.95
26382--26482	24	4.2	24	82	2	105	27	14	18	38	1.91
26552--26626	35	2.1	35	95	0	132	9	29	29	32	1.88
28599--28646	13	3.7	13	85	0	69	16	47	18	16	1.82
31146--31236	47	1.9	48	86	2	130	26	16	18	38	1.92
31143--31243	24	4.2	24	82	2	114	26	14	18	39	1.90
31313--31387	35	2.1	35	95	0	132	9	29	29	32	1.88
33374--33410	13	2.8	13	83	0	56	18	48	18	13	1.80
33352--33442	18	5.2	18	76	16	93	16	47	20	15	1.83
33358--33436	31	2.5	31	91	0	131	16	48	20	15	1.82
33409--33433	13	1.9	13	100	0	50	16	40	24	20	1.91
35931--36021	47	1.9	48	86	2	130	26	17	18	37	1.93
35928--36028	24	4.2	24	83	2	114	26	15	18	38	1.91
36098--36172	35	2.1	35	95	0	132	9	29	29	32	1.88
38146--38193	13	3.7	13	88	0	78	16	50	18	14	1.79
38157--38211	18	3.3	18	71	23	57	18	47	20	14	1.83
38157--38217	31	2.0	31	90	0	95	18	45	19	16	1.85
38192--38216	13	1.9	13	100	0	50	16	40	24	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40706--40796	47	1.9	48	86	2	130	26	17	18	37	1.93
40703--40803	24	4.2	24	83	2	114	26	15	18	38	1.91
40873--40947	35	2.1	35	95	0	132	9	29	29	32	1.88
43457--43503	18	2.7	18	76	3	51	29	4	4	61	1.34
44578--44606	2	15.0	2	92	7	51	51	0	0	48	1.00
46654--46703	3	16.7	3	82	0	64	36	6	0	58	1.23
49340--49391	26	2.0	26	100	0	104	42	3	26	26	1.73
54602--54641	20	1.9	22	90	10	66	40	40	10	10	1.72
55532--55594	27	2.3	27	89	5	92	66	1	25	6	1.24
56752--56796	18	2.5	17	85	7	54	33	8	8	48	1.65
58322--58460	35	3.9	35	77	7	147	26	17	20	34	1.95
58322--58462	71	2.0	71	88	0	210	26	17	21	34	1.96
62158--62226	35	2.0	35	88	0	102	28	18	17	34	1.94
64200--64252	19	2.8	19	88	0	79	16	28	20	33	1.95
65091--65664	45	12.8	45	87	2	823	29	22	9	37	1.87
65733--65780	19	2.5	19	100	0	96	45	10	18	25	1.81
66280--66330	20	2.6	19	87	12	68	27	21	19	31	1.97
66152--66330	96	1.9	95	86	3	227	27	22	17	32	1.96
67307--67358	27	1.9	27	88	0	77	46	11	13	28	1.78
68447--68564	35	3.3	35	72	6	112	27	17	19	35	1.94
68467--68582	35	3.3	34	72	9	90	27	17	17	37	1.92

Tables:   1

The End!