genome.fa.s6863.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006863.1 Hibiscus syriacus cultivar Beakdansim tig00017459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149789

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17754--18248	248	2.0	248	96	0	918	35	19	14	30	1.91
18357--18401	2	22.0	2	90	4	72	51	2	0	46	1.13
25641--25748	56	1.9	57	81	9	132	25	22	6	46	1.75
26496--26522	14	1.9	14	100	0	54	59	0	0	40	0.98
28244--28623	37	10.4	37	85	8	469	44	2	7	44	1.48
28621--28663	3	14.3	3	88	9	52	25	6	0	67	1.15
28629--28672	18	2.4	18	80	3	52	20	6	0	72	1.07
28623--28682	28	2.1	30	87	6	88	18	8	0	73	1.08
29733--29810	24	3.3	23	71	5	59	20	3	2	73	1.12
29767--29809	9	4.9	8	81	18	50	16	2	2	79	0.95
29830--29891	5	13.2	5	72	13	51	19	3	1	75	1.02
29830--29891	14	4.1	14	75	17	61	19	3	1	75	1.02
29837--29931	17	5.5	17	74	17	63	17	4	3	74	1.11
29792--29915	41	3.1	41	83	6	139	21	4	1	71	1.13
29828--29931	41	2.5	39	82	14	129	20	3	2	73	1.13
31200--31259	23	2.6	23	91	0	102	41	1	3	53	1.27
31212--31292	23	4.2	19	75	25	64	40	1	2	55	1.21
31373--31448	23	3.3	22	76	10	73	52	2	0	44	1.14
31409--31449	20	2.0	20	86	13	57	48	2	0	48	1.14
31409--31500	22	4.2	22	75	18	68	43	3	0	53	1.17
32468--32510	21	2.1	20	86	4	59	20	11	4	62	1.46
33359--33400	19	2.1	21	86	8	61	59	4	0	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33739--33769	15	2.1	15	93	0	53	48	16	6	29	1.70
40376--40585	110	1.9	110	100	0	420	36	22	12	28	1.91
52293--52333	16	2.6	16	84	3	57	12	26	9	51	1.70
73189--73236	24	2.0	24	91	0	78	27	10	27	35	1.89
73191--73242	24	2.2	24	85	0	68	32	9	25	32	1.88
75396--75457	30	2.1	30	84	6	81	40	3	12	43	1.59
80950--81009	31	1.9	32	82	3	77	20	11	15	53	1.72
86671--86778	56	1.9	56	92	0	180	26	11	17	44	1.82
103065--103102	20	1.9	20	94	0	67	55	13	5	26	1.59
118425--118462	20	1.9	20	94	0	67	76	7	5	10	1.15
129083--129169	44	2.0	45	86	6	124	25	24	12	37	1.90
129142--129256	45	2.6	45	85	0	158	23	21	8	46	1.79
129234--129409	46	3.8	46	86	3	192	25	19	9	46	1.79
129439--130003	81	7.0	81	84	2	681	29	24	10	35	1.89
129461--129985	243	2.2	242	87	1	755	29	24	10	36	1.89
129955--130205	67	3.8	67	91	0	396	28	23	15	32	1.95
130841--130911	19	3.5	20	78	16	74	28	19	16	35	1.94
133055--133091	2	18.5	2	100	0	74	48	0	0	51	1.00
134803--134862	32	1.9	32	90	6	97	28	20	3	48	1.65
135057--135492	81	5.4	81	83	3	542	28	24	12	35	1.91
135445--135695	67	3.8	67	88	2	353	27	25	15	32	1.95
136299--136357	22	2.9	20	90	7	84	30	20	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142439--142504	22	3.0	21	73	6	60	48	15	1	34	1.54
142898--142974	38	2.1	36	90	4	118	51	3	12	31	1.58
143757--143802	18	2.6	18	76	13	51	43	4	2	50	1.34
144264--144440	59	3.0	59	81	6	200	29	22	16	31	1.96
147895--147953	29	2.0	29	100	0	118	27	16	6	49	1.71

Tables:   1

The End!