genome.fa.s6866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006866.1 Hibiscus syriacus cultivar Beakdansim tig00017472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85904

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3154--3198	23	2.0	22	83	16	56	44	15	22	17	1.86
3193--3304	52	2.1	53	96	1	208	29	25	16	29	1.96
9448--9877	215	2.0	216	97	0	808	30	22	17	29	1.97
12810--12879	2	35.0	2	100	0	140	50	0	0	50	1.00
12890--12925	18	2.0	18	89	10	56	33	0	11	55	1.35
15754--15830	38	2.0	38	85	9	104	25	6	29	37	1.81
21994--22040	21	2.2	21	96	0	85	29	34	17	19	1.94
22055--22109	21	2.6	21	88	0	83	23	21	23	30	1.99
22166--22239	21	3.6	21	74	7	80	20	20	25	33	1.97
22172--22264	40	2.3	42	94	3	163	21	19	23	35	1.96
22191--22260	21	3.5	20	72	16	72	20	20	22	37	1.95
22191--22268	19	3.9	19	74	12	75	23	20	21	34	1.97
28133--28423	36	7.8	36	84	7	325	44	3	5	47	1.42
28433--28494	3	20.7	3	78	21	51	27	4	0	67	1.10
34956--35665	85	8.4	85	91	1	1135	30	25	21	22	1.99
36314--36603	36	7.8	36	84	7	332	44	3	5	46	1.42
36613--36676	3	20.7	3	82	17	53	28	4	0	67	1.11
39592--39623	14	2.3	14	94	0	55	37	9	0	53	1.34
44316--44346	13	2.4	13	100	0	62	45	0	0	54	0.99
45189--45258	36	1.9	36	100	0	140	34	22	14	28	1.93
45222--45284	21	2.8	23	83	9	94	36	25	9	28	1.87
53108--53143	14	2.6	14	95	4	65	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53223--53276	13	4.6	12	80	13	51	40	0	3	55	1.17
54716--54752	19	1.9	19	88	0	56	40	5	10	43	1.63
61373--61421	21	2.3	21	100	0	98	18	18	32	30	1.95
61392--61532	42	3.2	42	90	6	210	21	18	22	37	1.94
61426--61534	21	5.2	21	70	16	100	22	18	20	39	1.92
62108--62138	11	2.9	11	95	4	55	0	9	58	32	1.31
62218--62333	21	5.6	21	80	10	130	24	21	23	31	1.99
62199--62333	41	3.3	41	80	6	182	24	21	22	31	1.98
63498--63557	29	2.1	29	90	0	93	28	10	18	43	1.82
64596--64620	13	1.9	13	100	0	50	28	0	0	72	0.86
67505--67558	20	2.7	19	73	18	56	33	31	18	16	1.93
67541--67594	21	2.6	21	71	11	56	33	24	18	24	1.97
67587--67639	20	2.7	20	88	5	72	43	22	18	15	1.87
67648--67717	20	3.5	20	80	3	86	37	25	18	18	1.94
67817--67903	20	4.3	21	82	5	83	32	21	19	26	1.97
67831--67903	20	3.7	20	87	3	103	34	23	20	21	1.97
68754--68807	24	2.2	24	93	0	90	20	18	20	40	1.91
71228--71316	20	4.4	20	88	2	135	34	24	22	17	1.96
71321--71483	19	8.8	19	84	9	221	46	16	20	15	1.84
71637--71673	14	2.6	14	86	0	56	48	21	0	29	1.50
73597--73683	20	4.3	20	88	0	120	39	19	18	22	1.93
73718--73761	19	2.3	19	88	0	61	13	15	27	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73727--73764	19	2.0	19	94	0	67	7	15	28	47	1.74
73733--73824	33	2.8	33	83	3	107	11	20	22	44	1.84
73776--73824	17	3.1	17	71	17	59	12	24	20	42	1.86
73912--74286	92	4.1	93	93	4	584	47	18	12	21	1.81
80944--81020	34	2.3	34	84	4	102	23	19	18	38	1.93
82445--82497	26	2.0	26	82	7	63	39	0	15	45	1.46
82658--82723	32	2.0	33	82	8	82	36	13	16	33	1.88
83692--83735	2	22.5	2	95	4	81	50	0	0	50	1.00
85823--85883	9	5.8	10	78	21	63	39	0	0	60	0.97
85823--85871	3	16.7	3	76	19	50	36	0	0	63	0.95
85835--85883	15	3.0	17	82	17	68	40	0	0	59	0.98

Tables:   1

The End!