Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006869.1 Hibiscus syriacus cultivar Beakdansim tig00017482_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73280

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1813--1862
24
2.2
21
80
13
55
56
0
8
36
1.29
1992--2042
23
2.1
24
82
10
59
49
1
0
49
1.12
3427--3464
3
12.3
3
88
5
58
63
0
2
34
1.09
15862--15891
15
1.9
16
93
6
53
23
6
3
66
1.30
15869--15906
16
2.3
17
81
9
51
18
13
2
65
1.37
16124--16179
24
2.3
24
93
0
94
25
7
16
51
1.69
20596--20630
18
1.9
18
88
0
52
48
0
0
51
1.00
21293--21415
63
2.0
62
87
4
176
47
24
9
18
1.79
25817--25877
4
15.2
4
85
0
50
50
14
0
34
1.43
25825--25863
2
19.5
2
89
0
51
51
7
0
41
1.31
25817--25877
8
7.6
8
84
0
59
50
14
0
34
1.43
25827--25867
10
4.3
10
81
12
59
51
9
0
39
1.35
25821--25865
20
2.2
20
92
0
72
51
11
0
37
1.38
25829--25875
18
2.6
18
86
0
67
51
12
0
36
1.40
25817--25877
12
5.4
12
75
15
67
50
14
0
34
1.43
25821--25880
10
5.8
10
76
7
57
50
15
0
35
1.44
26212--26307
31
3.1
30
80
3
102
33
21
18
26
1.97
28359--28429
2
35.5
2
100
0
142
50
0
0
49
1.00
28942--28991
21
2.5
20
87
9
66
34
24
10
32
1.88
31722--31755
16
2.1
16
100
0
68
11
35
23
29
1.90
37973--38030
24
2.4
24
85
0
80
36
17
24
22
1.95
38281--38334
2
27.0
2
100
0
108
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43369--43418
21
2.5
20
87
9
66
34
24
10
32
1.88
46147--46180
16
2.1
16
94
0
59
11
35
20
32
1.89
52815--52905
48
1.9
47
88
6
139
28
24
26
20
1.99
52818--52903
24
3.7
23
84
9
111
27
24
26
20
1.99
53812--53851
20
2.0
20
90
0
62
17
27
37
17
1.92
54673--54722
21
2.5
20
87
9
66
34
24
10
32
1.88

Tables:   1

The End!