Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000687.1 Hibiscus syriacus cultivar Beakdansim tig00001341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88193

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
824--892
3
22.7
3
94
2
120
63
0
1
34
1.03
1105--2100
110
8.9
113
92
4
1558
29
18
14
37
1.90
2815--3621
83
9.8
83
96
2
1495
37
22
11
27
1.89
4742--4794
15
3.8
13
79
16
61
1
16
0
81
0.79
4742--4805
21
2.9
22
73
19
53
3
17
0
79
0.85
15360--15397
15
2.8
13
88
11
51
68
2
5
23
1.23
15472--15496
7
3.6
7
100
0
50
32
0
0
68
0.90
16886--16945
3
20.3
3
89
3
95
36
1
0
61
1.06
19662--19724
32
2.0
32
87
0
90
36
6
15
41
1.73
19378--20189
265
3.0
270
81
7
926
34
12
17
36
1.87
19634--20198
283
2.0
280
84
3
724
33
12
17
36
1.88
20946--20985
18
2.2
18
86
4
53
25
2
2
70
1.13
23349--23380
2
16.5
2
93
6
57
46
0
0
53
1.00
23401--23442
3
14.7
3
82
9
52
28
0
0
71
0.86
23400--23444
8
5.4
8
84
5
54
26
0
0
73
0.84
23389--23446
15
3.6
15
75
20
55
24
0
1
74
0.92
26406--27156
110
6.9
110
87
4
1047
34
24
17
23
1.96
26406--27156
216
3.4
218
87
4
1018
34
24
17
23
1.96
27273--28041
84
9.2
84
75
6
600
31
24
19
24
1.98
27268--28025
250
3.0
249
87
2
1047
31
24
19
24
1.98
27284--28041
334
2.3
328
78
5
772
31
23
19
25
1.98
28386--28455
15
4.9
15
75
19
62
30
0
0
70
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28386--28456
8
9.4
7
77
19
56
29
0
0
70
0.88
28386--28423
4
9.5
4
83
11
51
28
0
0
71
0.87
28387--28455
3
21.7
3
82
11
52
30
0
0
69
0.89
28504--28572
33
2.1
33
97
0
129
43
20
10
26
1.83
36633--36661
2
14.5
2
100
0
58
48
0
0
51
1.00
38400--38444
13
3.4
13
85
11
56
60
0
0
40
0.97
38443--38486
14
3.0
14
81
12
52
59
0
4
36
1.18
40552--40642
3
31.0
3
92
4
141
1
36
0
62
1.02
40615--40656
19
2.2
19
83
8
50
9
42
0
47
1.36
58258--58330
31
2.4
31
78
0
83
49
12
10
27
1.74
61437--61478
20
2.2
19
86
4
57
64
4
0
30
1.14
61357--61582
120
1.9
119
83
4
296
46
8
8
36
1.66
62963--63040
3
25.7
3
84
7
104
61
0
0
38
0.96
63159--63332
76
2.3
76
94
0
312
33
21
20
24
1.97
63457--63667
76
2.8
76
95
0
388
34
22
18
24
1.96
64361--64435
22
3.4
22
94
0
132
40
13
13
33
1.83
64802--64956
54
3.0
53
83
8
201
26
23
14
35
1.93
67026--67246
114
1.9
114
88
0
334
31
21
14
33
1.93
69400--69507
7
14.4
7
73
17
76
4
16
0
78
0.91
69398--69507
17
6.8
16
74
15
77
4
17
0
78
0.92
69399--69507
28
4.0
27
74
16
91
4
16
0
78
0.90
69401--69507
39
2.9
36
83
10
128
4
16
0
78
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72239--72287
20
2.5
20
86
0
71
59
12
10
18
1.60
72243--72312
35
2.0
34
83
2
86
58
11
11
18
1.62
72372--72410
8
5.1
8
81
12
55
61
10
15
12
1.56
72372--72410
15
2.6
15
91
0
60
61
10
15
12
1.56
75259--75314
29
2.0
28
83
16
73
50
0
1
48
1.11
76885--76945
3
19.7
3
89
3
86
62
0
0
37
0.96
78973--79034
32
1.9
32
83
0
79
24
11
20
43
1.85
80761--80806
24
1.9
24
100
0
92
41
15
13
30
1.85
81348--81413
31
2.2
30
86
2
87
31
24
7
36
1.83
81435--81473
20
2.0
20
84
0
51
25
15
0
58
1.37
82107--82165
30
2.0
30
96
3
111
35
37
3
23
1.72

Tables:   1

The End!