genome.fa.s6872.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006872.1 Hibiscus syriacus cultivar Beakdansim tig00017502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114568

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2468--2535	3	22.7	3	96	0	127	0	33	0	66	0.92
3288--3334	2	24.0	2	95	4	87	48	0	0	51	1.00
12030--12090	29	2.1	29	84	9	79	54	3	3	39	1.33
18628--18665	20	1.9	20	88	0	58	63	2	7	26	1.35
19951--21330	106	13.0	106	92	0	2219	22	18	25	33	1.97
21331--21468	37	3.8	36	82	6	163	40	14	18	26	1.89
22215--22291	22	3.5	22	85	0	109	23	10	23	42	1.84
22893--22951	19	3.3	18	83	6	75	1	11	5	81	0.93
26179--26232	18	3.1	18	72	17	51	64	1	7	25	1.30
35823--35867	22	2.0	22	91	0	72	24	6	15	53	1.66
41308--41340	16	1.9	17	88	11	50	63	0	6	30	1.18
41930--41967	3	12.3	3	88	5	58	34	2	0	63	1.09
46498--46558	29	2.1	29	90	0	95	37	18	26	18	1.93
47568--47786	43	5.1	43	89	0	294	27	21	22	28	1.99
47590--47842	43	5.9	43	86	1	168	28	20	22	28	1.99
47636--47836	86	2.3	86	82	3	253	27	21	22	27	1.99
48002--48047	21	2.2	21	84	0	56	60	17	4	17	1.51
48914--49026	36	3.1	36	96	0	199	37	17	13	31	1.89
52475--52754	133	2.1	133	89	3	416	48	18	13	18	1.81
53352--53752	165	2.4	165	83	4	515	34	19	19	26	1.95
53369--53752	41	9.4	41	82	3	452	34	19	19	26	1.95
62275--62470	20	9.6	20	75	7	144	25	26	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62290--62348	21	2.7	22	76	5	75	22	25	20	32	1.98
63051--63138	20	4.4	20	82	1	88	14	15	22	46	1.83
64849--64898	18	2.8	18	100	0	100	32	20	6	42	1.76
65053--65113	20	3.0	20	95	0	113	39	24	19	16	1.92
65157--65222	20	3.4	19	77	8	71	18	18	25	37	1.93
65156--65233	38	2.0	39	82	5	95	19	17	23	39	1.92
65714--65791	21	3.7	21	75	3	59	24	38	15	21	1.92
67210--67271	14	4.3	14	77	6	61	38	0	14	46	1.45
67385--67423	20	2.0	20	94	0	69	51	17	20	10	1.74
67466--67676	20	10.9	20	83	6	254	26	18	22	33	1.96
67562--67588	14	1.9	14	100	0	54	7	14	29	48	1.71
67505--67648	74	1.9	74	90	2	227	24	16	24	34	1.95
67486--67668	94	1.9	94	88	0	276	25	17	23	33	1.96
67405--67676	114	2.4	114	86	1	359	27	18	21	32	1.97
67647--67915	140	1.9	140	97	0	511	41	15	13	28	1.86
67976--68010	18	1.9	18	94	0	61	17	2	25	54	1.57
71135--71190	20	2.8	20	86	0	85	26	23	25	25	2.00
71182--71238	20	2.8	20	94	0	96	26	19	15	38	1.92
86773--87364	201	2.9	201	95	1	1060	32	13	10	43	1.79
90779--90843	12	5.8	12	72	13	50	46	1	0	52	1.10
90769--90830	23	2.7	23	82	7	72	53	1	0	45	1.10
90815--90918	54	1.9	54	83	14	135	48	0	1	49	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90930--91015	27	3.1	27	71	18	70	47	1	2	48	1.22
91001--91080	35	2.3	35	77	14	87	55	1	0	43	1.08
90881--91042	59	3.0	53	74	17	138	48	0	1	50	1.13
91002--91074	23	3.1	23	82	5	76	53	1	0	45	1.09
91115--91184	33	2.3	29	83	14	79	48	4	0	47	1.21
91161--91229	14	4.9	14	74	15	54	59	0	0	40	0.97
91408--91483	29	2.6	29	81	6	91	32	18	6	42	1.76
91417--91481	15	4.5	15	84	5	89	30	21	6	41	1.77
95333--95360	2	14.0	2	100	0	56	50	0	0	50	1.00
96540--96584	23	2.0	23	86	0	63	26	28	24	20	1.99
96563--96864	149	2.0	148	96	1	561	36	19	16	27	1.93
96949--97018	30	2.3	30	92	2	113	31	22	4	41	1.73
97033--97100	28	2.4	29	90	2	102	39	13	8	38	1.75
97368--97398	16	1.9	16	93	0	53	0	22	0	77	0.77
97401--97438	20	1.9	20	88	0	58	10	31	34	23	1.89
97402--97551	67	2.3	67	90	3	232	18	26	28	28	1.98
104986--105044	30	1.9	31	86	3	84	32	6	10	50	1.62
105301--105329	7	4.1	7	100	0	58	27	0	31	41	1.56
114495--114539	23	2.0	23	90	0	72	33	26	22	17	1.96

Tables:   1

The End!