Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006873.1 Hibiscus syriacus cultivar Beakdansim tig00017503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67118
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Found at i:8002 original size:42 final size:42
Alignment explanation
Indices: 7943--8034 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
7933 CTCGAAATCT
*
7943 TGTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTTCC
1 TGTGTTTGTTTCACGTAATTCGTTTTTCGAAAAAT-GTTTTCC
7986 T-TGTTTGTTTCACGTAATTCGTTTTTCGAAAAATGTTTTCC
1 TGTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATGTTTTCC
8027 TGTGTTTG
1 TGTGTTTG
8035 GTTGGAGGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
41 7 0.15
42 39 0.83
43 1 0.02
ACGTcount: A:0.18, C:0.13, G:0.16, T:0.52
Consensus pattern (42 bp):
TGTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATGTTTTCC
Found at i:8222 original size:139 final size:139
Alignment explanation
Indices: 8055--8333 Score: 522
Period size: 139 Copynumber: 2.0 Consensus size: 139
8045 AATTGGTTGG
* * *
8055 TCAACGTAAAATATTTTTCTGGTCAACAGAATTTCCTTTGTGTTTTCTGGAAAATAAATTTCGGT
1 TCAACGTAAAACATTTTTCTGATCAACAGAATTTCCTTTGTGTTTTCTGGAAAATAAATTACGGT
8120 CTGATTTTCCGTAAGTCATTTTCCGAACTTTTCACTTCAAAGAATAAATACTCAAAATAATTTTA
66 CTGATTTTCCGTAAGTCATTTTCCGAACTTTTCACTTCAAAGAATAAATACTCAAAATAATTTTA
8185 TTTTATGAA
131 TTTTATGAA
8194 TCAACGTAAAACATTTTTCTGATCAACAGAATTTCCTTTGTGTTTTCTGGAAAATAAATTACGGT
1 TCAACGTAAAACATTTTTCTGATCAACAGAATTTCCTTTGTGTTTTCTGGAAAATAAATTACGGT
*
8259 CTGATTTTCCGTAAGTCATTTTCCGAACTTTTCACTTCAAAGAATAAATATTCAAAATAATTTTA
66 CTGATTTTCCGTAAGTCATTTTCCGAACTTTTCACTTCAAAGAATAAATACTCAAAATAATTTTA
8324 TTTTATGAA
131 TTTTATGAA
8333 T
1 T
8334 TTAATATTAA
Statistics
Matches: 136, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 136 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (139 bp):
TCAACGTAAAACATTTTTCTGATCAACAGAATTTCCTTTGTGTTTTCTGGAAAATAAATTACGGT
CTGATTTTCCGTAAGTCATTTTCCGAACTTTTCACTTCAAAGAATAAATACTCAAAATAATTTTA
TTTTATGAA
Found at i:8432 original size:26 final size:24
Alignment explanation
Indices: 8370--8432 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 24
8360 CATTTTAATA
8370 AAAATAT-TAATTATTAAAATATTT
1 AAAATATAT-ATTATTAAAATATTT
*
8394 AAAATATAT-TTATTAATAT-TTCT
1 AAAATATATATTATTAAAATATT-T
8417 AATAATATAGTATTAT
1 AA-AATATA-TATTAT
8433 ATTTTTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 2 0.06
23 12 0.36
24 13 0.39
25 2 0.06
26 4 0.12
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
AAAATATATATTATTAAAATATTT
Found at i:8434 original size:22 final size:23
Alignment explanation
Indices: 8404--8447 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
8394 AAAATATATT
8404 TATTAATATTTCTAATAATATAG
1 TATTAATATTTCTAATAATATAG
* *
8427 TATT-ATATTTTTAATATTATA
1 TATTAATATTTCTAATAATATA
8448 ACAAAACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTAATATTTCTAATAATATAG
Found at i:8554 original size:28 final size:29
Alignment explanation
Indices: 8487--8591 Score: 110
Period size: 30 Copynumber: 3.6 Consensus size: 29
8477 TAAGATATTA
*
8487 TATTTTTAT-TTTAATAATATATAATAAAT
1 TATTTATATATTTAATAATATATAAT-AAT
8516 TATTTATATATTTAATAATGA-ATAAT-AT
1 TATTTATATATTTAATAAT-ATATAATAAT
*
8544 TATTTATATATTTAATATTAATATAATAAT
1 TATTTATATATTTAATAAT-ATATAATAAT
* *
8574 CTAATAATAT-TTTAATAA
1 -TATTTATATATTTAATAA
8592 AAATGTTTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
28 21 0.32
29 13 0.20
30 23 0.35
31 8 0.12
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (29 bp):
TATTTATATATTTAATAATATATAATAAT
Found at i:8589 original size:19 final size:18
Alignment explanation
Indices: 8497--8591 Score: 57
Period size: 19 Copynumber: 5.0 Consensus size: 18
8487 TATTTTTATT
*
8497 TTAATAATA-TATAATAAA
1 TTAATAATATTTTAAT-AA
* *
8515 TTATTTATATATTTAATAA
1 TTAATAATAT-TTTAATAA
* *
8534 TGAATAATATTATTTATATAT
1 TTAATAATA-T-TTTA-ATAA
* * *
8555 TTAATATTAATATAATAA
1 TTAATAATATTTTAATAA
8573 TCTAATAATATTTTAATAA
1 T-TAATAATATTTTAATAA
8592 AAATGTTTAA
Statistics
Matches: 57, Mismatches: 15, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
18 11 0.19
19 25 0.44
20 11 0.19
21 10 0.18
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (18 bp):
TTAATAATATTTTAATAA
Found at i:8612 original size:23 final size:23
Alignment explanation
Indices: 8586--8630 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8576 AATAATATTT
8586 TAATAAAAATGTTTAAAATATAC
1 TAATAAAAATGTTTAAAATATAC
* * *
8609 TAATTAATATTTTTAAAATATA
1 TAATAAAAATGTTTAAAATATA
8631 ATATAATACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAAATGTTTAAAATATAC
Found at i:8767 original size:27 final size:26
Alignment explanation
Indices: 8734--8809 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 26
8724 ATTTAAAAAA
8734 AATATTTAATAATAAATAAATTATTTT
1 AATATTT-ATAATAAATAAATTATTTT
* *
8761 AATATTT-TAA-AAAT-AATAATATT
1 AATATTTATAATAAATAAATTATTTT
8784 AAGT-TTTATAATAAATAATATTATTT
1 AA-TATTTATAATAAATAA-ATTATTT
8810 ATTGTATTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
23 12 0.30
24 8 0.20
25 7 0.17
26 1 0.03
27 12 0.30
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (26 bp):
AATATTTATAATAAATAAATTATTTT
Found at i:8790 original size:22 final size:22
Alignment explanation
Indices: 8747--8806 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
8737 ATTTAATAAT
* * *
8747 AAATAAATTATTTTAATATTTTA
1 AAATAAATAATATTAA-GTTTTA
8770 AAA-ATAATAATATTAAGTTTTA
1 AAATA-AATAATATTAAGTTTTA
*
8792 TAATAAATAATATTA
1 AAATAAATAATATTA
8807 TTTATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
AAATAAATAATATTAAGTTTTA
Found at i:8799 original size:25 final size:25
Alignment explanation
Indices: 8734--8808 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
8724 ATTTAAAAAA
* *
8734 AATATTTAATAATAAATAAATTATTTT
1 AATATTT-ATAATAAAT-AATAATATT
8761 AATATTT-TAA-AAATAATAATATT
1 AATATTTATAATAAATAATAATATT
*
8784 AAGT-TTTATAATAAATAATATTATT
1 AA-TATTTATAATAAATAATAATATT
8809 TATTGTATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
23 12 0.29
24 8 0.19
25 15 0.36
27 7 0.17
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
AATATTTATAATAAATAATAATATT
Found at i:9025 original size:14 final size:14
Alignment explanation
Indices: 8977--9025 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
8967 CCAGAAATGT
*
8977 AATTTATTTTTCAG
1 AATTCATTTTTCAG
** *
8991 AATTCAAATTACAG
1 AATTCATTTTTCAG
9005 TAATTCATTTTTCAG
1 -AATTCATTTTTCAG
9020 AATTCA
1 AATTCA
9026 ATTTCTAGAA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (14 bp):
AATTCATTTTTCAG
Found at i:9029 original size:15 final size:15
Alignment explanation
Indices: 8982--9029 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8972 AATGTAATTT
8982 ATTTTTCAGAATTCA
1 ATTTTTCAGAATTCA
* *
8997 A-ATTACAGTAATTC-
1 ATTTTTCAG-AATTCA
9011 ATTTTTCAGAATTCA
1 ATTTTTCAGAATTCA
9026 ATTT
1 ATTT
9030 CTAGAAATCC
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.46
Consensus pattern (15 bp):
ATTTTTCAGAATTCA
Found at i:11097 original size:3 final size:3
Alignment explanation
Indices: 11082--11128 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
11072 ATCGAAAAAA
* *
11082 TAT TAT TAA TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
11129 CCTACCTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:11724 original size:145 final size:142
Alignment explanation
Indices: 11377--11862 Score: 463
Period size: 145 Copynumber: 3.5 Consensus size: 142
11367 TCAATATTAA
* * * * *
11377 GAACGGTCAAAAGTTACGC-AAGACCATCACGAACAACATATTGAAAATTCAGGACGATCGGACG
1 GAACGGTCAAAAGTTGCGCGATG-TCATCACGAACAACATACTAAAAATTCAGGACGATCGGACG
* * ** * * *
11441 G-CGATGG-AT-T-GGAGAAACTAAGCCGAACGATTTTTGGTCTCTTGCCGACGATCGGGATCTC
65 GTGGATGGAATATCGGAGAAAATAAATCGAACGGTTTTTGGCCTCTTACCGACGATCGGGATCTC
*
11502 CAATCAACATTTC
130 CAATCAACATTCC
* * * * * * *
11515 GAACGGTCAGACGTTGCGCGA-GACTAGCACAAACAACATACTAAAAATTCAGGATGATCAGACG
1 GAACGGTCAAAAGTTGCGCGATGTC-ATCACGAACAACATACTAAAAATTCAGGACGATCGGACG
* * *
11579 GTGGACTACGGAATATCGGAGAAAATAAATCGAACGGTTTTTGGCCTCTTTCCAACGATCGAGAT
65 GTGGA-T--GGAATATCGGAGAAAATAAATCGAACGGTTTTTGGCCTCTTACCGACGATCGGGAT
*
11644 CTCCGATCAACATTCC
127 CTCCAATCAACATTCC
* * * * * * *
11660 AAACAGTGAAAAGTTGTGTC-ATGTCATCACGAACAGCATACTGAAATTTCAGGACGATCGGACG
1 GAACGGTCAAAAGTTGCG-CGATGTCATCACGAACAACATACTAAAAATTCAGGACGATCGGACG
* * * ** * *
11724 GTGG-T--AA-ATCGGAGAAAACAACTCCGGACGGTTTTTGGCCTCGCACCGGCGATCGGGAGCT
65 GTGGATGGAATATCGGAGAAAATAAAT-CGAACGGTTTTTGGCCTCTTACCGACGATCGGGATCT
11785 CCAATCAACATTCC
129 CCAATCAACATTCC
* * *
11799 GAACGGTCAAAAGTTGCGCGATGTCAACACGAACAACATACTAAAATTTCAGAACGATCGGACG
1 GAACGGTCAAAAGTTGCGCGATGTCATCACGAACAACATACTAAAAATTCAGGACGATCGGACG
11863 ACGGTACGAC
Statistics
Matches: 281, Mismatches: 54, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
137 1 0.00
138 66 0.23
139 101 0.36
140 1 0.00
142 2 0.01
143 3 0.01
144 1 0.00
145 103 0.37
146 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (142 bp):
GAACGGTCAAAAGTTGCGCGATGTCATCACGAACAACATACTAAAAATTCAGGACGATCGGACGG
TGGATGGAATATCGGAGAAAATAAATCGAACGGTTTTTGGCCTCTTACCGACGATCGGGATCTCC
AATCAACATTCC
Found at i:12063 original size:29 final size:30
Alignment explanation
Indices: 12008--12084 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
11998 ATAATTTTGA
* *
12008 CACTTTAGTTTCTATTATTTTATTTTA-GT
1 CACTTAAGTTTCTATTTTTTTATTTTATGT
12037 CACTTAAGTTTCTATTTTTATTA-TTTATGT
1 CACTTAAGTTTCTATTTTT-TTATTTTATGT
*
12067 C-CTTTAAATTTCTATTTT
1 CAC-TTAAGTTTCTATTTT
12085 AACTGTTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 22 0.52
30 20 0.48
ACGTcount: A:0.22, C:0.12, G:0.05, T:0.61
Consensus pattern (30 bp):
CACTTAAGTTTCTATTTTTTTATTTTATGT
Found at i:12079 original size:30 final size:29
Alignment explanation
Indices: 12016--12084 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
12006 GACACTTTAG
* *
12016 TTTCTATTATTTTATTTTAGTCACTTAAG
1 TTTCTATTTTTTTATTTTAGTCACTTAAA
12045 TTTCTATTTTTATTA-TTTATGTC-CTTTAAA
1 TTTCTATTTTT-TTATTTTA-GTCAC-TTAAA
12075 TTTCTATTTT
1 TTTCTATTTT
12085 AACTGTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.22, C:0.10, G:0.04, T:0.64
Consensus pattern (29 bp):
TTTCTATTTTTTTATTTTAGTCACTTAAA
Found at i:16694 original size:28 final size:28
Alignment explanation
Indices: 16657--16713 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
16647 GTGTCGGGAG
*
16657 CCCCTCTTGCCCCTGCCCAGAGCCGGCC
1 CCCCTCTTGCCCCTCCCCAGAGCCGGCC
16685 CCCCTCTTGCCCCTCCCCAGAGCCGGCC
1 CCCCTCTTGCCCCTCCCCAGAGCCGGCC
16713 C
1 C
16714 TGATTGTAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.07, C:0.60, G:0.19, T:0.14
Consensus pattern (28 bp):
CCCCTCTTGCCCCTCCCCAGAGCCGGCC
Found at i:18812 original size:2 final size:2
Alignment explanation
Indices: 18805--18862 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
18795 TAAAACATAC
18805 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18847 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
18863 TGTATGTTAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23752 original size:21 final size:21
Alignment explanation
Indices: 23712--23752 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23702 TCTGGGCAAA
* *
23712 GGGAATCGATACCCATTCAAG
1 GGGAACCGATACCCACTCAAG
*
23733 GGGAACCGATACCCCCTCAA
1 GGGAACCGATACCCACTCAA
23753 ATGAATCAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.15
Consensus pattern (21 bp):
GGGAACCGATACCCACTCAAG
Found at i:23825 original size:23 final size:22
Alignment explanation
Indices: 23777--23825 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
23767 ACAGAATGTC
23777 AAGG-GGGAACCGATACCCCCA
1 AAGGAGGGAACCGATACCCCCA
* *
23798 CAGGAGGGAACCGATTCCCCCTA
1 AAGGAGGGAACCGATACCCCC-A
23821 AAGGA
1 AAGGA
23826 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 15 0.65
23 5 0.22
ACGTcount: A:0.33, C:0.31, G:0.29, T:0.08
Consensus pattern (22 bp):
AAGGAGGGAACCGATACCCCCA
Found at i:25412 original size:103 final size:103
Alignment explanation
Indices: 25287--25607 Score: 606
Period size: 103 Copynumber: 3.1 Consensus size: 103
25277 GTCGAGGGTC
25287 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
25352 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
25390 TATGTGGTCTTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
25455 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
25493 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
25558 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
25596 TATGTGGTCCTT
1 TATGTGGTCCTT
25608 ATGGACATTA
Statistics
Matches: 213, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 213 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:25691 original size:23 final size:23
Alignment explanation
Indices: 25623--25683 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
25613 CATTATTATA
*
25623 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTATG
* *
25646 CGGCACTACGATGCAATTCTATG
1 TGGCACTACGGTGCAATTCTATG
*
25669 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
25684 TTTATATGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTATG
Found at i:27322 original size:3 final size:3
Alignment explanation
Indices: 27316--27428 Score: 156
Period size: 3 Copynumber: 38.0 Consensus size: 3
27306 TTTATCCATT
* * *
27316 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
27364 TTA TTA TTA TTA TTA TTA TTA TTA ATA ATA ATA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
27412 TTA TCA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
27429 AATATATAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
2 2 0.02
3 97 0.98
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:40200 original size:10 final size:9
Alignment explanation
Indices: 40180--40278 Score: 73
Period size: 9 Copynumber: 10.9 Consensus size: 9
40170 ATTATGCTTG
40180 AAGAAAAGA
1 AAGAAAAGA
40189 AAGAAGAAGA
1 AAGAA-AAGA
40199 AA-AAAA-A
1 AAGAAAAGA
*
40206 AAGAAAAAA
1 AAGAAAAGA
*
40215 AAGGAAA-A
1 AAGAAAAGA
40223 AA-AAAAGAA
1 AAGAAAAG-A
40232 AAGAAAAGA
1 AAGAAAAGA
*
40241 AAAAAAAGAA
1 AAGAAAAG-A
*
40251 GAAGAAAAAA
1 -AAGAAAAGA
40261 ATAGAAAAAGA
1 A-AG-AAAAGA
40272 AA-AAAAG
1 AAGAAAAG
40279 GGTCAAGGTG
Statistics
Matches: 74, Mismatches: 6, Indels: 21
0.73 0.06 0.21
Matches are distributed among these distances:
7 6 0.08
8 14 0.19
9 26 0.35
10 16 0.22
11 12 0.16
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.01
Consensus pattern (9 bp):
AAGAAAAGA
Found at i:40204 original size:1 final size:1
Alignment explanation
Indices: 40198--40277 Score: 52
Period size: 1 Copynumber: 80.0 Consensus size: 1
40188 AAAGAAGAAG
* ** * * * * * * *
40198 AAAAAAAAAAGAAAAAAAAGGAAAAAAAAAAGAAAAGAAAAGAAAAAAAAGAAGAAGAAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
40263 AGAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAA
40278 GGGTCAAGGT
Statistics
Matches: 57, Mismatches: 22, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.01
Consensus pattern (1 bp):
A
Found at i:40209 original size:21 final size:20
Alignment explanation
Indices: 40183--40278 Score: 108
Period size: 21 Copynumber: 4.7 Consensus size: 20
40173 ATGCTTGAAG
40183 AAAAGAAAGAAGAAGAAAAAA
1 AAAAGAAAGAA-AAGAAAAAA
*
40204 AAAAGAAAAAAAAGGAAAAAA
1 AAAAGAAAGAAAA-GAAAAAA
40225 AAAAGAAAAGAAAAGAAAAAA
1 AAAAG-AAAGAAAAGAAAAAA
*
40246 AAGAAG-AAGAAAA-AAATAGA
1 AA-AAGAAAGAAAAGAAA-AAA
40266 AAAAGAAA-AAAAG
1 AAAAGAAAGAAAAG
40279 GGTCAAGGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
19 10 0.15
20 15 0.23
21 31 0.47
22 10 0.15
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.01
Consensus pattern (20 bp):
AAAAGAAAGAAAAGAAAAAA
Found at i:40226 original size:22 final size:22
Alignment explanation
Indices: 40192--40278 Score: 104
Period size: 25 Copynumber: 3.7 Consensus size: 22
40182 GAAAAGAAAG
40192 AAGAAGAAAAAAAAAAGAAAAAA
1 AAGAA-AAAAAAAAAAGAAAAAA
*
40215 AAG-GAAAAAAAAAAGAAAAGAA
1 AAGAAAAAAAAAAAAGAAAA-AA
40237 AAGAAAAAAAAGAAGAAGAAAAAA
1 AAGAAAAAAAA-AA-AAGAAAAAA
40261 ATAGAAAAAGAAAAAAAG
1 A-AGAAAAA-AAAAAAAG
40279 GGTCAAGGTG
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
21 15 0.27
22 5 0.09
23 9 0.16
24 8 0.14
25 16 0.29
26 3 0.05
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (22 bp):
AAGAAAAAAAAAAAAGAAAAAA
Found at i:40228 original size:16 final size:16
Alignment explanation
Indices: 40180--40277 Score: 87
Period size: 17 Copynumber: 5.9 Consensus size: 16
40170 ATTATGCTTG
* *
40180 AAGAAAAG-AAAGAAG
1 AAGAAAAGAAAAAAAA
40195 AAGAAAA-AAAAAAGAA
1 AAGAAAAGAAAAAA-AA
40211 AA-AAAAGGAAAAAAAA
1 AAGAAAA-GAAAAAAAA
40227 AAGAAAAGAAAAGAAAA
1 AAGAAAAGAAAA-AAAA
40244 AA-AAGAAGAAGAAAAAA
1 AAGAA-AAGAA-AAAAAA
40261 ATAGAAAAAGAAAAAAA
1 A-AG-AAAAGAAAAAAA
40278 GGGTCAAGGT
Statistics
Matches: 70, Mismatches: 2, Indels: 19
0.77 0.02 0.21
Matches are distributed among these distances:
15 15 0.21
16 14 0.20
17 26 0.37
18 8 0.11
19 5 0.07
20 2 0.03
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (16 bp):
AAGAAAAGAAAAAAAA
Found at i:40242 original size:31 final size:30
Alignment explanation
Indices: 40183--40277 Score: 104
Period size: 31 Copynumber: 3.1 Consensus size: 30
40173 ATGCTTGAAG
* *
40183 AAAAGAAAGAAGAAGAAAAAA-AAAAGAAAA
1 AAAAG-AAGAAAAAAAAAAAAGAAAAGAAAA
40213 AAAAGGAA-AAAAAAAAGAAAAGAAAAGAAAA
1 AAAA-GAAGAAAAAAAA-AAAAGAAAAGAAAA
* *
40244 AAAAGAAGAAGAAAAAAATAGAAAAAGAAAA
1 AAAAGAAGAAAAAAAAAAAAG-AAAAGAAAA
40275 AAA
1 AAA
40278 GGGTCAAGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
29 6 0.11
30 17 0.30
31 33 0.59
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (30 bp):
AAAAGAAGAAAAAAAAAAAAGAAAAGAAAA
Found at i:41506 original size:52 final size:52
Alignment explanation
Indices: 41428--41744 Score: 564
Period size: 52 Copynumber: 6.1 Consensus size: 52
41418 AATATGCTCA
41428 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
1 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
41480 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
1 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
*
41532 AACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
1 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
* *
41584 AACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACAT
1 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
*
41636 AACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
1 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
* *
41688 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGATTGGACAGAATCA-
1 AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA-CAT
41740 AGCAT
1 AGCAT
41745 TGAATTTAGA
Statistics
Matches: 258, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
52 256 0.99
53 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.36
Consensus pattern (52 bp):
AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACAT
Found at i:41825 original size:83 final size:83
Alignment explanation
Indices: 41686--41890 Score: 356
Period size: 83 Copynumber: 2.5 Consensus size: 83
41676 TGGACAGAAC
* *
41686 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGATTGGACAGAATCAAGCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAATTGGACAGAATCAAGCATTGAATT
41751 TAGAAGATAAATTTGCCA
66 TAGAAGATAAATTTGCCA
41769 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAATTGGACAGAATCAAGCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAATTGGACAGAATCAAGCATTGAATT
* *
41834 TGGAAGATGAATTTGCCA
66 TAGAAGATAAATTTGCCA
* *
41852 ATAGCATCTTCTGGAAGCGTTCTTTGAGTTATTTGATCT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
41891 GAAGAAGTGC
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 116 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (83 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAATTGGACAGAATCAAGCATTGAATT
TAGAAGATAAATTTGCCA
Found at i:42637 original size:113 final size:113
Alignment explanation
Indices: 42440--43218 Score: 1166
Period size: 113 Copynumber: 6.8 Consensus size: 113
42430 TAGCAAAGAT
* * *
42440 TTGAATCCGTCATTTGATGGATTAAC-TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
* *
42504 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
66 AGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* *
42552 TTGAATCCGTCATTTGATGGATTAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
*
42617 AGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
66 AGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* *
42665 TTGAATCCGTCATTTGATGGATTAACTTTTCCAGAGAAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAG-GTTCATAATGAGAAGAA--C-TCAT
* * *
42730 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGT
62 CTGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * *
42782 TTAAATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
1 TTGAATCCATCATTTGATGGATCA-ACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
*
42847 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
65 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * *
42896 TTAAATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
1 TTGAATCCATCATTTGATGGATCA-ACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
42961 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
65 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * *
43010 TTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
* * * *
43075 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGT
66 AGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * * * *
43123 TTAAATCCATCATTTGGTGGATCAACATTGCTAG-GTAAAGTTCATAATGAGAAGAACTCATCTG
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAG-AAGGTTCATAATGAGAAGAACTCATCTG
43187 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAA
65 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAA
43219 CTCATCAAGA
Statistics
Matches: 630, Mismatches: 30, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
112 27 0.04
113 295 0.47
114 204 0.32
115 1 0.00
116 1 0.00
117 88 0.14
118 14 0.02
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (113 bp):
TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
Found at i:43476 original size:3 final size:3
Alignment explanation
Indices: 43470--43582 Score: 183
Period size: 3 Copynumber: 38.0 Consensus size: 3
43460 TTTATCCATT
* * *
43470 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
43518 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
43566 TTA TCA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
43583 AATATATTAA
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
2 2 0.02
3 99 0.98
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:53286 original size:113 final size:113
Alignment explanation
Indices: 53088--53314 Score: 445
Period size: 113 Copynumber: 2.0 Consensus size: 113
53078 ACAAACAAAC
53088 ATAATCTATTTAAGGATCCGCAACAGCAGCTGGAGGCAAATTTTGGAAGAGCCCTTTGATAAATA
1 ATAATCTATTTAAGGATCCGCAACAGCAGCTGGAGGCAAATTTTGGAAGAGCCCTTTGATAAATA
*
53153 TGCTGTTGATAAAGTTATGGAGATAAGATTGCAAGTGATTAACATGAA
66 TGCTGCTGATAAAGTTATGGAGATAAGATTGCAAGTGATTAACATGAA
53201 ATAATCTATTTAAGGATCCGCAACAGCAGCTGGAGGCAAATTTTGGAAGAGCCCTTTGATAAATA
1 ATAATCTATTTAAGGATCCGCAACAGCAGCTGGAGGCAAATTTTGGAAGAGCCCTTTGATAAATA
53266 TGCTGCTGATAAAGTTATGGAGATAAGATTGCAAGTGATTAACATGAA
66 TGCTGCTGATAAAGTTATGGAGATAAGATTGCAAGTGATTAACATGAA
53314 A
1 A
53315 AATTGGTTCG
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (113 bp):
ATAATCTATTTAAGGATCCGCAACAGCAGCTGGAGGCAAATTTTGGAAGAGCCCTTTGATAAATA
TGCTGCTGATAAAGTTATGGAGATAAGATTGCAAGTGATTAACATGAA
Found at i:57563 original size:65 final size:65
Alignment explanation
Indices: 57482--57638 Score: 208
Period size: 65 Copynumber: 2.4 Consensus size: 65
57472 TACACCCATT
* * * * *
57482 TCGAATGCATTTTGTGTACCGATGCACA-AGCCTTGCATCGATGCACTCTTAAATATTTTGAAAC
1 TCGAATGTATTTTGTGTACCGATGCACAGA-CCATACATCGATGCACTCCTAAATATTTTAAAAC
57546 A
65 A
**
57547 TCGAATGTATTTTGTGTACCGATGCACAGACCATACATCGATGCACTCCTGGATATTTTAAAACA
1 TCGAATGTATTTTGTGTACCGATGCACAGACCATACATCGATGCACTCCTAAATATTTTAAAACA
* * *
57612 TCGAATGTAATTAGTGTACTGATGCAC
1 TCGAATGTATTTTGTGTACCGATGCAC
57639 CCCTAGTGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
65 80 0.99
66 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (65 bp):
TCGAATGTATTTTGTGTACCGATGCACAGACCATACATCGATGCACTCCTAAATATTTTAAAACA
Found at i:65202 original size:65 final size:64
Alignment explanation
Indices: 65119--65274 Score: 215
Period size: 65 Copynumber: 2.4 Consensus size: 64
65109 CATACCCATT
*
65119 TCGAATGCATTTGTGTACCGATGCACA-AGCCATGCATCAATGCACTCTTGAATATTTTGAAACA
1 TCGAATGCATTTGTGTACCGATGCACAGA-CCATGCATCAATGCACTCCTGAATATTTTGAAACA
* * **
65183 TTGAATGCATTTTGTGTACCGATGCACAGACCATGCATCGATGCACTCCTGGCTATTTTGAAACA
1 TCGAATGCA-TTTGTGTACCGATGCACAGACCATGCATCAATGCACTCCTGAATATTTTGAAACA
* *
65248 TCGAATGTAATTAGTGTACCGATGCAC
1 TCGAATG-CATTTGTGTACCGATGCAC
65275 CCCTAGTGTA
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
64 8 0.10
65 71 0.88
66 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (64 bp):
TCGAATGCATTTGTGTACCGATGCACAGACCATGCATCAATGCACTCCTGAATATTTTGAAACA
Found at i:66249 original size:31 final size:31
Alignment explanation
Indices: 66151--66241 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
66141 CAATTTAAGG
66151 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTTTTTGGACTTGAATTGAATTTA
66182 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTTTTTGGACTTGAATTGAATTTA
66213 CAAAAT-GTTTTTGGACTT-AATTGAATTTA
1 CAAAATGGTTTTTGGACTTGAATTGAATTTA
66242 TTCAAAATTT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.18
30 12 0.20
31 37 0.62
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.43
Consensus pattern (31 bp):
CAAAATGGTTTTTGGACTTGAATTGAATTTA
Found at i:66465 original size:21 final size:21
Alignment explanation
Indices: 66439--66480 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
66429 ATTTGAATAT
*
66439 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
66460 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
66481 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:66798 original size:33 final size:32
Alignment explanation
Indices: 66759--66827 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
66749 TTTTGTAAAG
* * *
66759 GGGAAAGGTTCTAGCTTATCCCGTGTAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-GAAAAACTA
*
66792 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
66824 GGGA
1 GGGA
66828 GTTTGTAAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 11 0.34
33 21 0.66
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Done.