genome.fa.s6874.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006874.1 Hibiscus syriacus cultivar Beakdansim tig00017506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250946

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10770--10868	31	3.2	31	88	0	144	36	15	13	35	1.86
13026--13100	38	2.0	38	89	5	116	29	9	13	48	1.73
15994--16032	20	2.0	20	84	0	51	43	17	0	38	1.50
16460--16491	2	16.5	2	93	6	57	46	0	0	53	1.00
22916--22958	22	2.0	21	86	8	61	25	0	0	74	0.82
24293--24397	53	2.0	52	81	9	124	42	11	25	20	1.85
27392--27473	14	5.8	15	80	15	86	46	0	0	53	1.00
27391--27475	21	3.8	22	71	13	66	47	0	0	52	1.00
27421--27471	11	4.5	11	83	11	59	39	0	0	60	0.97
27421--27473	3	18.3	3	84	7	74	39	0	0	60	0.97
28179--28207	13	2.2	13	100	0	58	0	31	62	6	1.22
28759--28796	19	2.1	19	95	5	69	18	5	5	71	1.25
28896--28934	13	3.0	13	82	10	53	38	0	2	58	1.12
29551--29602	20	2.6	21	76	11	56	26	7	0	65	1.20
36579--36833	83	3.1	83	97	0	474	29	14	20	35	1.92
39544--39623	22	3.6	22	70	0	70	36	12	11	40	1.79
40292--41313	76	13.4	76	96	0	1864	21	21	21	35	1.96
41463--41551	14	7.0	13	74	17	80	44	0	0	55	0.99
41467--41540	3	25.3	3	78	5	80	43	0	0	56	0.99
41971--41995	13	1.9	13	100	0	50	92	8	0	0	0.40
41975--41999	11	2.3	11	100	0	50	92	8	0	0	0.40
42246--42274	13	2.2	13	100	0	58	0	31	62	6	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42826--42863	19	2.1	19	95	5	69	18	5	5	71	1.25
42960--42998	13	3.0	13	82	10	53	38	0	2	58	1.12
46288--46341	3	18.0	3	96	0	99	64	0	35	0	0.94
50011--50042	2	16.0	2	100	0	64	0	50	0	50	1.00
60279--60342	29	2.2	30	81	13	80	28	0	18	53	1.45
62333--62670	66	5.0	66	76	11	269	31	23	16	28	1.96
62325--62670	135	2.6	132	79	6	340	32	23	16	27	1.96
65349--65397	3	16.3	3	100	0	98	32	0	0	67	0.91
69689--69719	2	15.5	2	100	0	62	51	0	0	48	1.00
73917--73953	19	1.9	19	94	0	65	32	29	16	21	1.95
76248--76447	109	1.8	109	93	2	348	39	16	21	23	1.92
81188--81312	60	2.1	60	81	0	142	35	12	15	37	1.84
91619--91657	16	2.4	16	83	8	53	12	23	41	23	1.88
95956--96148	20	9.6	20	83	5	237	34	26	19	19	1.95
96528--96598	33	2.2	33	94	0	124	11	23	16	47	1.79
96678--96784	21	5.6	20	73	17	102	46	18	21	13	1.83
96739--96795	14	3.7	14	75	20	60	43	22	24	8	1.81
96732--96811	33	2.4	33	95	0	142	47	22	21	8	1.78
99755--99844	3	30.7	3	79	12	98	60	1	1	37	1.12
99755--99834	19	4.1	19	76	10	81	60	1	1	37	1.13
99755--99844	22	3.8	24	82	11	98	60	1	1	37	1.12
99755--99846	28	3.4	26	75	17	80	58	1	1	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100102--100654	52	10.6	52	94	0	944	29	25	15	28	1.96
100236--100316	24	3.2	24	67	13	63	25	28	12	33	1.92
100650--100929	55	5.1	55	92	1	465	28	28	14	28	1.95
100650--100929	108	2.6	110	92	2	483	28	28	14	28	1.95
102207--102331	8	15.6	8	70	15	64	9	10	1	78	1.03
102207--102334	9	13.8	9	70	21	59	10	10	1	78	1.04
102223--102305	38	2.2	38	82	4	105	9	12	0	78	0.97
102237--102331	27	3.6	25	80	16	102	11	10	0	77	0.98
103824--103853	14	2.1	14	100	0	60	46	0	13	40	1.43
106114--106153	21	1.9	21	89	0	62	10	25	40	25	1.86
113069--113100	3	10.3	3	93	6	55	3	34	0	62	1.11
114516--114553	2	19.0	2	100	0	76	50	0	0	50	1.00
120790--120853	3	21.3	3	83	12	78	60	1	1	35	1.15
120790--120876	19	4.6	19	76	8	79	56	1	1	41	1.14
122137--122359	93	2.4	93	96	0	401	23	13	17	45	1.84
122457--122580	33	3.7	33	89	1	176	45	25	18	9	1.80
122489--122580	19	5.4	18	71	24	56	46	26	18	8	1.78
122475--122531	14	3.7	14	70	20	51	43	21	24	10	1.83
122506--122564	14	3.9	14	74	20	55	47	27	18	6	1.74
122576--122748	19	9.6	19	75	12	132	10	19	23	46	1.81
122579--122673	33	2.9	33	90	0	145	12	20	20	47	1.82
122576--122748	33	4.8	38	79	8	132	10	19	23	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124673--124708	14	2.6	14	95	0	63	33	0	22	44	1.53
124815--124942	20	6.9	20	87	11	177	45	16	24	14	1.84
124941--124996	19	3.2	18	71	23	57	16	14	19	50	1.79
124948--125029	33	2.5	33	82	6	85	14	17	21	46	1.84
127294--127320	12	2.2	12	100	0	54	0	25	0	74	0.83
127496--127542	24	2.0	24	87	8	69	38	21	14	25	1.92
128235--128463	20	11.4	20	84	1	226	19	17	25	37	1.94
128431--128528	21	4.8	20	75	10	81	21	19	21	37	1.94
128431--128529	42	2.4	43	77	11	100	21	19	22	37	1.94
129902--129962	32	1.9	32	83	6	79	45	3	8	42	1.50
132535--132606	2	36.0	2	100	0	144	50	0	0	50	1.00
137818--137842	13	1.9	13	100	0	50	56	0	0	44	0.99
138400--138451	3	17.3	3	100	0	104	32	0	0	67	0.91
140189--140232	20	2.2	20	91	0	70	43	18	22	15	1.88
140548--140601	20	2.7	20	91	0	90	11	24	20	44	1.83
142279--142741	224	2.1	225	91	2	743	45	13	14	26	1.82
142279--142741	113	4.1	112	92	1	723	45	13	14	26	1.82
142613--143062	182	2.5	181	87	1	623	43	11	15	29	1.81
143501--143548	23	2.1	23	84	0	60	41	18	4	35	1.70
145625--145671	24	2.0	24	100	0	94	53	12	12	21	1.72
145625--145681	24	2.5	23	91	5	89	49	14	12	24	1.77
150345--151225	442	2.0	442	95	0	1582	35	18	11	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151599--151667	29	2.4	29	97	0	129	36	17	23	23	1.95
159178--159267	39	2.3	39	76	16	96	27	3	4	64	1.29
161596--161645	26	1.9	26	95	0	91	44	10	10	36	1.72
164406--164437	16	2.0	16	100	0	64	43	6	25	25	1.77
164829--164891	25	2.4	27	79	10	69	57	1	0	41	1.08
164816--164872	17	3.2	17	76	13	62	52	1	0	45	1.11
164846--164904	14	4.4	14	79	16	61	64	0	0	35	0.94
164846--164904	8	7.6	8	74	14	61	64	0	0	35	0.94
164867--164904	14	2.6	15	91	8	69	71	0	0	28	0.87
184589--184635	21	2.2	22	85	7	71	21	25	17	36	1.94
185492--185551	24	2.5	24	71	10	59	28	16	16	38	1.91
188083--188209	33	3.8	33	96	0	218	46	18	22	11	1.82
188387--188425	14	2.8	13	85	11	51	46	15	0	38	1.46
195103--195142	21	1.9	21	89	0	62	25	40	25	10	1.86
201388--201425	20	1.9	19	94	5	67	50	15	23	10	1.75
202164--202206	21	2.0	21	81	0	50	27	27	25	18	1.98
207655--207724	19	3.7	19	90	0	104	45	21	20	12	1.84
207751--207822	20	3.5	20	81	5	83	13	16	18	51	1.77
208351--208441	20	4.5	21	86	4	107	28	17	20	32	1.96
209775--209814	18	2.2	18	86	4	53	37	0	5	57	1.21
225251--225285	18	1.9	18	94	0	61	48	0	42	8	1.33
233639--233790	75	2.0	75	100	0	304	38	17	13	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234213--234251	20	2.0	19	85	5	51	53	15	10	20	1.70
237860--237904	19	2.4	19	100	0	90	26	15	20	37	1.92
246944--246992	22	2.2	22	92	0	80	18	14	28	38	1.90
247098--247128	15	2.1	15	100	0	62	29	51	19	0	1.47
247269--247332	20	3.2	20	68	4	56	40	21	18	18	1.91
247289--247362	21	3.6	21	68	3	69	36	24	16	22	1.94
247266--247366	41	2.5	41	91	0	157	38	21	17	21	1.93
247389--247434	19	2.4	19	100	0	92	36	17	26	19	1.94

Tables:   1

The End!