genome.fa.s6876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006876.1 Hibiscus syriacus cultivar Beakdansim tig00017513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59293

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5449--5482	18	1.9	17	88	5	50	29	0	5	64	1.17
16254--16322	18	3.9	18	73	22	67	15	28	33	21	1.95
17268--17472	31	6.6	31	95	0	365	20	19	21	38	1.93
17966--18008	21	2.0	21	82	8	52	32	4	13	48	1.63
18843--18883	16	2.7	16	85	7	59	12	9	17	60	1.57
20586--20624	20	1.9	21	94	5	71	66	5	5	23	1.32
22137--22208	30	2.6	27	77	18	76	56	2	4	36	1.33
22576--22750	91	1.9	92	87	3	255	25	18	14	41	1.88
22669--23473	240	3.3	240	93	0	1369	25	20	17	36	1.94
23298--23605	136	2.3	135	89	2	465	26	21	18	34	1.96
24484--24516	10	3.3	10	95	0	57	12	6	0	81	0.85
31945--31969	6	4.2	6	100	0	50	52	16	16	16	1.76
38442--38489	3	16.0	3	78	8	53	58	6	0	35	1.23
39434--39463	13	2.3	13	94	0	51	70	0	0	30	0.88
41836--42078	85	2.9	84	87	1	315	25	18	20	34	1.96
43720--43765	3	15.3	3	86	8	67	34	0	2	63	1.07
46186--46380	59	3.3	59	90	1	293	33	20	11	35	1.88
46404--46793	54	7.2	54	90	0	584	33	20	17	28	1.96
47208--47262	22	2.6	22	82	5	69	27	20	16	36	1.93
49087--49180	14	7.0	12	74	20	55	3	11	4	80	0.96
49097--49164	21	3.1	23	78	19	83	2	10	4	82	0.92
49087--49162	14	5.3	15	75	9	61	3	10	3	81	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49097--49180	41	2.0	42	88	6	127	2	11	4	80	0.95
52153--52181	12	2.3	13	94	5	51	68	0	0	31	0.89
55207--55239	9	3.8	9	88	8	50	42	0	0	57	0.98
55218--55244	14	1.9	14	100	0	54	37	0	0	62	0.95
55267--55305	18	2.2	18	90	0	60	35	30	20	12	1.90
56653--56787	59	2.3	59	88	5	193	22	14	11	52	1.72
56742--56929	59	3.2	58	78	8	159	19	13	11	55	1.67
56653--56876	30	7.6	30	78	7	190	21	12	11	54	1.69

Tables:   1

The End!