genome.fa.s6877.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006877.1 Hibiscus syriacus cultivar Beakdansim tig00017522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94360

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4958--5020	30	2.1	31	93	3	110	46	15	12	25	1.82
7493--7551	30	2.0	30	83	6	75	30	10	5	54	1.56
14907--14945	20	1.9	21	94	5	71	46	25	15	12	1.81
15199--15675	182	2.6	180	84	5	647	46	11	14	28	1.78
16091--16148	15	3.7	15	79	6	62	22	48	1	27	1.60
18272--18327	2	28.0	2	100	0	112	50	0	0	50	1.00
18500--18527	2	14.0	2	100	0	56	50	0	0	50	1.00
19087--19111	12	2.1	12	100	0	50	20	16	16	48	1.82
20876--21036	64	2.5	64	80	8	177	32	17	22	27	1.96
21044--21081	20	1.9	20	88	0	58	36	18	18	26	1.94
22800--22884	23	3.7	23	72	13	75	29	25	25	18	1.98
24907--24967	23	2.7	23	92	0	104	16	26	27	29	1.97
33980--34169	94	2.0	94	94	0	335	32	11	16	40	1.83
37202--37266	31	2.1	30	81	16	71	56	0	10	32	1.34
52194--52236	3	14.3	3	100	0	86	67	0	0	32	0.91
61904--61955	27	2.0	27	84	3	70	51	0	3	44	1.19
62059--62130	27	2.7	26	77	12	74	51	1	1	45	1.18
62171--62221	23	2.2	23	85	0	66	41	1	1	54	1.22
62185--62219	18	1.9	18	88	0	52	40	0	0	60	0.97
62211--62257	22	2.1	23	88	4	69	53	0	2	44	1.12
62185--62263	32	2.4	33	81	12	92	49	0	1	49	1.09
62219--62262	22	2.0	22	82	8	54	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68445--68475	2	15.5	2	100	0	62	51	0	0	48	1.00
68621--68652	2	16.5	2	93	6	57	50	0	0	50	1.00
69857--69909	26	2.0	26	82	7	63	45	15	0	39	1.46
71339--71420	34	2.4	34	83	4	112	41	19	17	21	1.90
72403--72496	45	2.1	45	100	0	188	15	21	19	43	1.88
78153--78532	94	4.1	94	95	1	649	21	12	18	47	1.82
78620--78668	17	3.1	17	71	17	59	42	20	24	12	1.86
78620--78711	33	2.8	33	83	3	107	44	22	20	11	1.84
78680--78717	19	2.0	19	94	0	67	47	28	15	7	1.74
78761--78812	20	2.6	20	87	0	68	26	17	19	36	1.94
78779--78827	20	2.5	20	96	0	89	18	20	22	38	1.93
80776--80811	14	2.6	14	90	0	54	30	0	22	47	1.52
80967--81130	19	8.8	19	85	7	230	15	20	16	46	1.83
81135--81223	20	4.4	20	88	2	135	17	22	24	34	1.96
83638--83691	24	2.2	24	93	0	90	40	20	18	20	1.91
83638--83705	24	2.8	24	84	0	64	38	20	17	23	1.93
84681--84773	20	4.7	20	74	15	77	20	18	26	34	1.96
84705--84774	20	3.5	20	80	3	86	18	18	25	37	1.94
84783--84835	20	2.7	20	88	5	72	15	18	22	43	1.87
84864--84917	20	2.7	19	76	18	65	14	18	33	33	1.92
85770--85812	21	2.0	21	82	8	52	37	6	9	46	1.63
88792--88851	29	2.1	29	90	0	93	43	18	10	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88797--88862	29	2.3	29	81	0	78	45	16	10	27	1.80
89983--90095	21	5.6	21	80	14	121	30	23	22	23	1.99
89983--90114	39	3.3	39	77	14	151	31	22	21	23	1.98
90760--90828	19	3.5	19	70	18	61	40	21	17	20	1.91
90765--90921	43	4.1	41	77	22	148	36	24	18	21	1.95
90815--90873	29	2.0	30	96	3	111	33	25	20	20	1.97
90775--90916	72	2.0	74	86	11	210	35	23	19	21	1.95
90849--90939	21	4.3	21	74	18	98	31	28	18	20	1.97

Tables:   1

The End!