genome.fa.s6878.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006878.1 Hibiscus syriacus cultivar Beakdansim tig00017523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56051

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10166--10237	15	4.9	15	82	3	101	41	6	19	31	1.78
10166--10237	30	2.4	30	97	2	137	41	6	19	31	1.78
10220--10289	20	3.5	20	94	0	122	41	10	12	35	1.77
10455--10558	29	3.5	29	79	19	101	52	1	0	44	1.18
10455--10610	54	2.7	59	74	17	143	51	1	1	45	1.17
10543--10596	14	3.4	16	72	20	51	48	0	1	50	1.11
10572--10615	22	2.0	23	90	4	72	56	0	0	43	0.99
10572--10647	23	3.2	24	83	7	86	52	0	0	47	1.00
10576--10632	22	2.6	22	81	10	64	54	0	0	45	0.99
10821--10940	42	2.9	42	97	0	222	44	18	20	16	1.87
15803--15856	20	2.7	19	75	8	63	33	31	18	16	1.93
15803--15918	21	5.6	21	68	7	67	34	25	19	19	1.96
15906--16181	20	13.6	20	74	9	193	37	23	18	20	1.94
15967--16178	41	5.2	41	89	2	313	37	23	18	20	1.94
16738--16809	20	3.6	19	79	5	72	52	20	15	11	1.72
16753--16816	21	3.1	21	80	6	69	53	17	18	10	1.72
16798--16862	14	4.3	14	73	17	58	46	21	23	9	1.80
16793--16862	33	2.1	33	97	0	131	47	20	22	10	1.79
18638--19013	94	4.1	94	92	3	611	21	12	18	46	1.82
18638--19013	184	2.0	184	91	3	603	21	12	18	46	1.82
19131--19193	19	3.6	19	71	20	73	49	20	20	9	1.77
19101--19225	33	3.8	33	87	2	164	48	24	19	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19194--19231	19	2.0	19	94	0	67	50	31	13	5	1.63
19275--19381	20	5.3	20	87	0	151	23	18	21	36	1.95
19258--19347	40	2.4	37	84	12	105	24	21	20	34	1.96
21325--21360	14	2.6	14	90	0	54	30	0	22	47	1.52
21543--21596	24	2.2	24	93	0	90	40	20	18	20	1.91
21543--21610	24	2.8	24	84	0	64	38	20	17	23	1.93
22075--22160	20	4.3	20	88	2	120	23	18	20	37	1.94
22157--22202	21	2.2	21	84	7	58	36	17	26	19	1.94
22253--22485	20	11.6	20	77	7	222	19	18	24	36	1.94
22275--22485	41	5.2	41	90	2	327	19	18	24	37	1.94
22288--22546	40	6.4	39	83	8	240	19	18	23	37	1.94
22494--22546	20	2.7	20	91	5	81	13	18	24	43	1.86
22249--22546	40	7.4	40	78	11	231	19	18	24	37	1.94
25578--25655	23	3.3	23	78	1	84	33	23	19	24	1.97
25669--25879	103	2.0	103	97	1	397	36	24	13	26	1.92
28409--28495	35	2.5	34	80	12	97	54	10	8	27	1.62
30583--30804	111	2.0	111	95	0	399	45	11	7	36	1.68
30866--30906	18	2.3	18	91	4	66	63	2	4	29	1.28
30948--30978	10	3.1	10	95	0	53	35	0	32	32	1.58
31420--31466	2	23.5	2	100	0	94	48	0	0	51	1.00
31977--32037	16	3.8	16	95	0	104	52	26	14	6	1.66
33097--33166	24	2.9	24	87	8	90	58	15	8	17	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45138--45189	20	2.5	21	81	6	61	32	1	5	59	1.32
45138--45191	23	2.4	22	77	22	58	33	1	5	59	1.31
46244--46293	24	2.1	24	100	0	100	18	24	8	50	1.73
46709--46749	20	2.0	20	100	0	82	9	0	46	43	1.36

Tables:   1

The End!