Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000688.1 Hibiscus syriacus cultivar Beakdansim tig00001344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77558

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2467--2500
12
2.8
12
90
0
50
2
26
23
47
1.66
3684--3738
20
2.8
20
75
10
58
56
1
0
41
1.10
6436--6505
36
2.0
36
91
5
117
17
30
30
22
1.97
13206--13276
36
2.0
36
94
5
126
18
29
30
21
1.97
19937--20000
20
3.5
20
66
27
59
14
32
28
25
1.94
19933--19999
35
1.9
35
96
0
125
17
31
26
23
1.97
26348--26416
3
23.3
3
94
2
122
34
0
0
65
0.93
28031--28067
2
18.5
2
100
0
74
51
0
0
48
1.00
29145--29248
52
2.0
52
98
0
199
21
16
7
54
1.66
39972--40051
16
5.3
15
79
11
83
77
1
12
8
1.05
39972--40051
8
10.5
8
71
20
64
77
1
12
8
1.05
40017--40060
13
3.5
13
84
3
54
77
0
15
6
0.97
39987--40044
29
1.9
31
86
6
84
79
0
12
8
0.94
39987--40059
16
4.3
16
76
20
60
78
0
13
8
0.97
40910--41257
136
2.6
133
87
5
481
33
17
22
25
1.96
41062--41701
331
1.9
331
90
2
1027
37
16
20
25
1.93
41829--41868
3
13.7
3
89
5
64
37
0
0
62
0.95
42585--42614
2
15.0
2
100
0
60
50
0
0
50
1.00
43500--43526
2
13.5
2
100
0
54
51
0
0
48
1.00
55406--55461
25
2.3
25
81
3
60
35
0
7
57
1.26
63941--64010
31
2.2
32
82
9
83
40
10
20
30
1.85
66700--66752
22
2.4
22
80
0
61
22
20
15
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68200--68473
44
6.4
42
77
7
203
29
21
15
33
1.94
70753--70842
20
4.4
20
68
18
69
37
0
1
61
1.04
70773--70889
11
9.8
11
67
21
58
41
0
1
56
1.09
70761--70923
61
2.6
62
90
5
242
40
0
1
57
1.09
70851--70896
23
2.0
23
91
0
74
47
0
0
52
1.00
70915--70976
19
3.3
19
78
15
58
37
1
0
61
1.06
71421--71480
31
1.9
31
89
0
93
45
10
6
38
1.64
76632--76671
18
2.2
18
100
0
62
22
5
27
45
1.73

Tables:   1

The End!