Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006880.1 Hibiscus syriacus cultivar Beakdansim tig00017531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83635

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--59
26
2.2
27
81
9
66
46
1
3
48
1.29
65--119
21
2.7
20
89
10
85
45
3
1
49
1.30
45--121
21
3.8
21
80
15
81
45
3
1
49
1.28
156--396
2
119.5
2
71
16
124
44
4
2
48
1.36
728--780
28
2.0
27
85
7
72
30
9
3
56
1.49
6843--6909
29
2.4
28
80
9
66
59
2
2
34
1.28
15135--15173
19
2.1
19
85
9
53
15
0
7
76
0.99
20271--20572
146
2.1
146
94
3
545
34
21
17
26
1.95
21216--21257
13
3.5
13
75
18
54
30
23
4
40
1.75
21213--21263
23
2.2
23
100
0
102
37
19
3
39
1.70
21480--21514
18
1.9
18
88
11
54
22
17
5
54
1.64
22095--22139
21
2.1
21
87
0
63
15
24
28
31
1.96
25563--25609
24
1.9
24
82
4
58
36
4
8
51
1.52
27092--27346
128
2.0
126
96
3
476
34
21
16
28
1.95
34452--34531
36
2.2
36
97
0
151
32
21
7
38
1.81
34799--34916
56
2.1
55
83
10
152
35
24
20
19
1.96
34880--35032
42
3.6
42
82
7
186
33
20
20
24
1.97
35084--35387
42
7.2
42
80
9
309
34
21
21
22
1.97
35084--35386
125
2.4
124
82
9
364
34
21
21
22
1.97
35888--35942
20
2.8
20
94
0
92
52
5
10
30
1.59
38906--39127
41
5.4
41
84
3
286
38
17
18
25
1.92
38906--39127
83
2.7
82
84
4
286
38
17
18
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38889--39127
124
1.9
124
89
1
372
38
17
18
25
1.93
38937--39186
41
6.1
41
81
8
258
33
18
19
28
1.95
47286--47319
12
2.8
12
86
0
50
41
0
8
50
1.34
51663--51737
36
2.1
36
85
5
98
48
1
4
46
1.29
51877--51916
20
2.0
20
90
0
62
22
22
10
45
1.82
56120--56205
35
2.4
36
82
5
102
31
10
4
53
1.55
57429--57493
11
6.2
11
75
18
50
69
1
4
24
1.16
57429--57493
10
6.2
10
75
12
51
69
1
4
24
1.16
57429--57493
21
3.1
21
70
16
62
69
1
4
24
1.16
58906--58954
18
2.7
18
74
0
62
42
8
24
24
1.81
59113--59169
28
2.1
27
87
9
80
45
3
1
49
1.29
68280--68320
21
1.9
22
90
5
66
39
17
19
24
1.92
68489--68557
34
2.0
34
97
0
129
21
15
5
56
1.60
69818--69856
15
2.6
15
87
0
60
43
23
30
2
1.67
69817--69894
30
2.5
31
77
8
95
41
24
32
2
1.69
70738--70780
16
2.6
16
85
7
52
58
4
4
32
1.39
71712--71769
19
3.1
18
80
16
66
1
12
5
81
0.94
72186--72239
3
19.0
3
81
14
62
72
0
0
27
0.85
72180--72245
13
5.7
11
83
16
64
71
1
0
27
0.95
72187--72245
16
3.3
17
84
13
66
72
1
0
25
0.93
73680--73715
16
2.2
16
90
9
56
11
13
0
75
1.06

Tables:   1

The End!