Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006881.1 Hibiscus syriacus cultivar Beakdansim tig00017542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83030

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
395--606
20
10.6
20
73
10
164
20
18
22
38
1.94
397--606
41
5.2
41
85
7
270
20
18
22
38
1.93
615--666
19
2.6
19
85
11
61
13
21
25
40
1.89
718--771
20
2.7
19
75
8
63
16
18
31
33
1.93
5586--5700
42
2.8
42
93
4
198
16
20
19
43
1.88
5869--5914
22
2.1
22
84
8
58
50
0
0
50
1.00
5885--5943
21
2.8
22
85
7
70
47
0
0
52
1.00
5914--5964
13
3.8
13
73
12
50
52
1
0
45
1.12
6209--6278
20
3.5
20
94
0
122
35
12
10
41
1.77
6209--6287
40
2.0
40
87
0
113
35
13
8
41
1.76
6261--6327
15
4.5
15
84
3
91
34
19
7
38
1.80
6261--6332
30
2.4
30
97
2
137
31
19
6
41
1.78
19795--19843
26
1.9
25
91
4
80
36
6
30
26
1.81
22994--23019
12
2.2
12
100
0
52
61
30
0
7
1.24
23610--23743
39
3.6
38
72
20
113
37
11
0
50
1.39
24811--24902
31
2.9
31
93
4
150
18
16
9
55
1.68
28208--28255
23
2.1
23
92
3
80
62
10
10
16
1.53
28214--28262
23
2.1
23
96
0
89
53
12
14
20
1.73
28836--28910
30
2.4
30
82
6
87
22
8
33
36
1.84
28854--28911
30
1.9
30
92
0
98
20
6
29
43
1.78
29040--29065
2
13.0
2
100
0
52
50
0
0
50
1.00
30386--30444
29
2.0
29
87
6
84
15
33
28
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30454--30535
22
3.8
22
93
3
130
7
47
19
25
1.75
36971--37034
22
2.9
22
83
2
92
42
9
25
23
1.84
41546--41583
18
2.1
18
85
9
51
63
0
0
36
0.95
44862--44934
37
2.1
36
92
7
123
49
8
9
32
1.65
46508--46655
45
3.3
45
84
2
156
26
30
20
22
1.98
47679--47728
20
2.5
20
90
0
73
28
18
20
34
1.95
52093--52169
37
2.1
37
83
9
95
46
1
2
49
1.23
67835--67870
19
1.9
19
94
5
56
11
5
5
77
1.10
78494--78580
35
2.5
34
78
12
88
56
9
6
27
1.56
79176--79215
18
2.2
18
100
0
80
20
17
32
30
1.95
80725--80932
111
1.8
113
92
5
357
46
11
7
35
1.68
82021--82064
22
2.0
22
86
8
63
34
0
9
56
1.31
82328--82372
20
2.3
20
80
3
56
62
0
4
33
1.15

Tables:   1

The End!