genome.fa.s6882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006882.1 Hibiscus syriacus cultivar Beakdansim tig00017545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84751

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10274--10324	13	3.3	16	76	23	56	70	3	1	23	1.14
10268--10334	30	2.2	30	86	7	91	67	2	2	26	1.20
10726--10782	26	2.3	24	85	11	71	42	1	0	56	1.10
10726--10782	24	2.3	26	87	6	82	42	1	0	56	1.10
10830--10887	10	5.7	10	81	4	71	22	1	1	74	1.01
11509--11548	20	2.0	21	90	5	64	42	5	7	45	1.54
14659--14715	28	2.1	28	83	3	71	42	10	5	42	1.62
14685--14760	31	2.6	29	79	6	89	42	6	10	40	1.65
16461--16510	20	2.4	21	86	6	66	58	0	0	42	0.98
17353--17408	29	1.9	29	92	0	94	14	37	28	19	1.91
17419--17483	23	2.8	23	84	9	87	10	36	29	23	1.88
27109--27150	22	1.9	22	85	0	57	40	11	7	40	1.69
31894--31941	19	2.5	19	86	10	62	35	18	2	43	1.62
34260--34336	32	2.4	32	95	2	138	20	16	28	33	1.95
39337--39375	20	1.9	21	89	5	62	20	38	25	15	1.92
41316--41367	9	6.4	8	75	20	54	13	0	26	59	1.34
41319--41362	17	2.6	17	85	7	63	13	0	29	56	1.38
45912--45982	31	2.3	30	83	7	90	39	14	25	21	1.90
47427--47500	37	2.0	37	100	0	148	21	13	21	43	1.87
48521--48551	14	2.2	14	94	0	53	29	19	9	41	1.83
50891--50945	25	2.2	25	90	0	83	40	27	10	21	1.87
53206--53285	30	2.8	29	77	9	74	35	11	11	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53216--53299	28	3.0	28	77	6	80	35	11	13	39	1.81
54159--54297	60	2.3	60	82	4	165	33	16	15	33	1.91
55164--55980	411	2.0	412	98	0	1564	35	13	16	33	1.88
56309--56347	3	13.0	3	100	0	78	66	0	0	33	0.92
64662--64724	29	2.2	29	100	0	126	31	17	20	30	1.96
67204--67247	2	22.0	2	100	0	88	50	0	0	50	1.00
69863--69934	23	3.0	24	84	8	76	37	2	2	56	1.28
70781--70862	35	2.3	35	83	4	103	24	4	24	46	1.72
73426--73464	20	2.0	20	89	0	60	12	33	28	25	1.93
74102--74182	31	2.6	31	94	0	135	18	16	23	41	1.89
74104--74192	31	2.9	31	89	3	108	21	15	22	40	1.91
74906--74948	22	2.0	22	90	4	70	16	23	34	25	1.95
74981--75027	24	2.0	22	88	8	67	19	21	19	40	1.92
77785--77892	52	2.0	54	85	3	148	38	10	18	32	1.84
78227--78251	12	2.1	12	100	0	50	28	48	0	24	1.52
78964--79665	114	6.0	114	89	7	1064	27	11	21	39	1.88
79007--79665	242	2.8	236	97	1	1212	27	12	21	38	1.89
82599--82661	27	2.3	27	94	0	108	20	31	17	30	1.96

Tables:   1

The End!