genome.fa.s6883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006883.1 Hibiscus syriacus cultivar Beakdansim tig00017546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44916

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13093--13157	33	2.0	33	93	0	112	33	26	13	26	1.94
14757--14793	17	2.1	18	90	5	58	40	0	2	56	1.13
14762--14799	18	2.3	16	86	13	51	42	0	2	55	1.14
15423--15472	23	2.2	23	85	0	64	38	24	14	24	1.92
17599--17748	76	2.0	76	92	2	248	36	9	39	14	1.79
17835--17875	15	2.6	17	88	11	61	43	4	0	51	1.23
17905--17964	31	1.9	31	83	6	77	53	3	3	40	1.34
17940--17998	21	2.7	22	79	10	68	50	3	1	44	1.28
18055--18095	21	2.0	21	85	0	55	46	2	7	43	1.44
18136--18266	67	1.9	69	83	6	169	41	6	8	42	1.62
18471--18540	25	2.8	25	72	8	63	42	7	2	47	1.45
18494--18527	15	2.3	15	94	0	59	41	2	5	50	1.42
18433--18626	89	2.2	88	84	7	248	45	5	2	45	1.40
18602--18691	20	4.6	20	72	12	78	51	3	6	38	1.45
18603--18698	27	3.7	27	77	6	99	50	3	6	40	1.43
18664--18698	18	1.9	18	88	0	52	45	2	5	45	1.41
18719--18765	20	2.3	20	100	0	94	40	8	14	36	1.77
19004--19032	13	2.2	13	100	0	58	44	0	0	55	0.99
19106--19280	2	87.0	2	69	17	105	47	3	3	45	1.36
19090--19133	20	2.2	20	91	0	70	40	4	6	47	1.50
19106--19195	29	3.1	29	88	7	139	47	2	4	45	1.35
19117--19283	9	18.2	9	69	20	98	48	3	2	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19381--20091	215	3.3	213	88	6	1091	30	9	8	51	1.64
20444--20496	21	2.5	21	96	0	97	20	35	20	22	1.96
23376--23519	71	2.0	71	100	0	288	42	24	16	16	1.88
23499--23529	2	15.5	2	93	0	53	51	45	3	0	1.17
24227--24736	162	3.0	162	84	7	619	40	14	15	28	1.87
24406--24735	182	1.8	182	91	0	552	40	15	14	29	1.86
24406--24801	182	2.2	181	87	1	542	41	15	14	29	1.86
25257--25292	6	6.0	6	100	0	72	33	50	16	0	1.46
25903--25927	12	2.1	12	100	0	50	32	24	16	28	1.96
25952--26015	21	3.1	21	72	4	67	37	25	18	18	1.94
28082--28124	21	2.0	21	86	0	59	44	9	27	18	1.80
28166--28219	25	2.2	25	86	0	72	29	0	48	22	1.51
28174--28252	33	2.4	33	95	0	140	26	0	49	24	1.51
28437--28471	18	1.9	18	94	0	61	60	0	37	2	1.12
30025--30073	19	2.6	19	93	0	80	30	2	12	55	1.48
30423--31578	199	5.8	199	86	2	1480	38	13	15	32	1.86
30423--31578	399	2.9	400	87	2	1635	38	13	15	32	1.86
30423--31578	598	1.9	597	86	3	1626	38	13	15	32	1.86
32239--32270	2	16.0	2	100	0	64	50	0	0	50	1.00
34409--34461	24	2.2	24	82	0	61	33	3	15	47	1.63
34829--35300	193	2.5	194	85	6	640	41	12	13	31	1.83
35262--35339	20	3.6	20	76	18	84	44	3	11	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35254--35321	20	2.9	24	75	22	81	47	4	10	38	1.58
35254--35346	46	2.0	46	97	0	177	46	5	10	37	1.62
39726--40435	199	3.6	197	82	6	801	40	14	14	30	1.87
40436--40483	23	2.1	23	88	0	69	39	16	8	35	1.79
40520--40564	23	2.0	23	86	0	63	40	17	6	35	1.76
40607--40651	23	2.0	23	90	0	72	37	17	8	35	1.81
40436--40674	87	2.7	87	95	0	424	33	13	10	43	1.77

Tables:   1

The End!