genome.fa.s6884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006884.1 Hibiscus syriacus cultivar Beakdansim tig00017547_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87642

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458--672	92	2.3	93	79	4	227	45	13	11	29	1.79
620--726	29	3.7	29	82	3	99	49	16	9	24	1.75
652--777	29	4.2	30	81	10	141	42	13	15	28	1.84
833--961	62	2.1	63	89	7	201	44	15	11	28	1.82
925--997	36	2.0	36	84	5	94	35	12	12	39	1.80
1026--1084	31	1.9	31	96	3	111	42	13	13	30	1.83
1110--1208	36	2.8	35	80	7	112	42	12	16	29	1.84
4627--4656	15	2.1	15	93	6	53	43	13	13	30	1.82
7179--7230	26	1.9	28	84	7	72	65	9	1	23	1.32
7178--7236	26	2.2	27	80	14	68	66	8	1	23	1.29
8506--8545	3	12.7	3	84	10	53	65	0	0	35	0.93
8665--8715	21	2.4	21	100	0	102	21	21	9	47	1.79
13841--13882	2	21.0	2	100	0	84	50	0	0	50	1.00
21362--21429	27	2.6	27	90	4	113	41	17	11	29	1.85
25077--25144	27	2.6	27	95	4	122	41	16	11	30	1.84
37225--37258	16	2.1	16	94	0	59	32	26	8	32	1.87
44452--44544	21	4.6	20	77	4	87	39	19	23	17	1.92
44469--44544	21	3.7	21	80	3	100	40	18	25	15	1.90
44452--44544	41	2.3	41	98	0	177	39	19	23	17	1.92
44471--44605	41	3.3	41	84	4	148	38	20	20	20	1.94
44533--44626	20	4.7	20	80	2	89	34	24	17	24	1.96
45181--45225	19	2.4	19	88	0	63	46	26	17	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45221--45404	19	10.1	19	74	15	156	11	22	21	44	1.85
45292--45379	33	2.6	33	89	1	131	12	25	23	38	1.90
45347--45404	20	2.9	20	80	10	64	13	24	18	43	1.87
47402--47524	42	2.9	42	80	2	122	22	36	17	22	1.95
47458--47524	21	3.2	21	66	6	55	23	35	20	19	1.95
48881--48916	14	2.6	14	95	0	63	30	0	25	44	1.54
49116--49207	19	5.4	19	66	24	78	16	20	19	43	1.88
49102--49207	33	3.2	33	85	5	160	15	22	19	42	1.88
51706--51752	24	2.0	24	91	0	76	34	17	19	29	1.94
51710--51761	24	2.2	24	82	0	59	36	19	17	26	1.94
52807--52864	20	2.9	20	92	0	89	39	22	20	17	1.92
52883--53036	19	8.6	19	85	11	202	13	20	18	47	1.82
52883--53036	52	2.9	52	90	4	227	13	20	18	47	1.82
55026--55091	20	3.5	19	83	6	89	37	24	22	15	1.92
55007--55142	32	3.9	37	79	8	112	43	25	19	12	1.85
55024--55142	14	6.9	18	74	17	101	43	24	20	11	1.85
55065--55142	32	2.4	32	97	0	147	46	24	19	10	1.81
55149--55244	19	5.6	17	70	21	69	11	18	22	46	1.81
55171--55228	14	3.9	14	79	16	71	8	15	25	50	1.73
55154--55244	32	2.8	33	91	3	157	10	17	23	48	1.79
55229--55282	20	2.8	19	86	5	72	16	24	24	35	1.95
55217--55282	19	3.4	19	81	4	78	15	22	24	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55755--55799	18	2.5	18	85	0	63	11	15	46	26	1.79
57117--57154	20	1.9	20	88	0	58	50	21	15	13	1.78
57417--57460	22	2.0	22	90	0	70	20	15	43	20	1.88
57667--57744	41	1.9	41	89	0	120	23	15	23	38	1.92
57628--57741	20	5.7	20	77	10	90	25	16	24	33	1.96
57667--57762	41	2.3	41	83	3	113	22	18	21	36	1.95
57730--57802	21	3.5	21	84	1	94	19	26	16	38	1.92
58093--58149	20	2.8	20	91	2	87	38	15	0	45	1.47
67447--67518	38	1.9	38	94	2	128	43	38	4	13	1.64
75626--75807	60	3.1	60	78	4	199	32	24	5	37	1.79
75942--76109	60	2.8	60	81	10	184	41	5	20	31	1.77
77676--77710	17	2.1	17	88	0	52	31	17	20	31	1.95
85650--85694	21	2.1	21	91	0	72	4	46	24	24	1.71

Tables:   1

The End!