genome.fa.s6886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006886.1 Hibiscus syriacus cultivar Beakdansim tig00017557_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181885

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2171--2356	95	2.0	94	90	3	293	32	16	19	31	1.94
8537--9656	84	13.5	83	78	6	904	31	23	19	25	1.98
8578--9646	249	4.3	245	81	4	1080	30	23	19	25	1.98
8578--9646	165	6.5	163	80	6	892	30	23	19	25	1.98
8537--9646	413	2.7	412	86	2	1469	31	23	19	25	1.98
11061--11106	3	16.0	3	78	17	53	30	2	0	67	1.03
11502--11855	176	2.0	177	97	0	665	30	16	20	33	1.94
17262--17300	16	2.4	16	91	0	69	58	23	10	7	1.56
18390--18437	10	4.4	10	78	19	51	54	25	12	8	1.65
18397--18438	14	3.3	14	75	25	56	52	26	14	7	1.67
18390--18438	24	2.0	24	100	0	98	53	24	14	8	1.68
25319--25389	32	2.2	32	85	5	90	28	28	23	19	1.99
27483--27543	30	2.0	30	90	6	97	40	4	11	42	1.62
33602--33684	21	3.9	21	78	7	87	21	36	25	16	1.94
36071--36131	30	2.0	30	90	6	97	40	4	11	42	1.62
37209--37249	14	2.9	14	85	3	55	19	21	31	26	1.97
42333--42380	24	2.0	24	91	0	78	41	12	12	33	1.80
44813--45383	81	7.1	81	90	1	808	31	23	9	35	1.87
45401--45466	33	2.0	33	93	0	114	39	18	0	42	1.50
45694--46062	20	18.5	20	85	4	458	34	26	18	20	1.96
46958--46982	12	2.1	12	100	0	50	72	0	28	0	0.86
49255--49552	33	8.8	32	74	20	195	46	18	20	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49255--49573	51	6.2	49	83	9	277	46	18	21	13	1.83
49287--49593	84	3.6	83	87	9	415	46	17	21	14	1.84
49287--49593	51	6.0	51	87	9	357	46	17	21	14	1.84
49340--49593	33	7.5	34	81	14	203	46	18	20	14	1.84
49600--49701	19	5.6	19	85	12	151	14	23	17	44	1.86
49808--49844	14	2.6	14	91	0	65	45	21	0	32	1.52
51818--51874	14	3.7	14	77	20	60	47	22	19	10	1.80
51799--51891	33	2.8	33	91	0	159	48	21	19	10	1.79
51762--51896	19	7.6	19	76	16	119	46	23	18	11	1.81
51892--52020	19	7.3	19	75	17	125	8	17	28	45	1.77
51892--51983	33	2.8	33	93	3	150	7	18	28	45	1.76
52052--52516	92	5.0	93	98	1	900	46	19	12	21	1.83
54228--54324	19	5.7	18	72	22	84	42	22	24	10	1.85
54214--54302	14	5.7	14	72	25	72	41	23	25	8	1.83
54206--54319	33	3.5	33	93	1	203	44	21	24	9	1.82
54320--54364	19	2.4	19	92	0	72	8	17	26	46	1.78
54497--54567	33	2.2	33	92	0	115	47	18	22	11	1.80
54748--54801	22	2.5	21	78	3	63	20	16	38	24	1.92
54947--55139	20	9.6	20	82	5	219	19	19	25	35	1.95
54947--55139	60	3.2	60	83	0	251	19	19	25	35	1.95
55195--55246	20	2.6	20	96	0	95	21	13	26	38	1.90
59359--59392	14	2.4	14	90	5	50	47	5	14	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59853--59908	21	2.7	21	91	0	85	46	0	8	44	1.34
62134--62283	60	2.5	60	80	4	158	44	6	20	29	1.75
66297--66356	22	2.7	22	84	5	77	33	25	23	18	1.97
66488--66534	23	2.1	22	92	4	76	44	36	0	19	1.51
85561--85590	13	2.3	13	100	0	60	33	6	10	50	1.62
102166--102203	20	2.0	19	85	10	51	50	5	18	26	1.68
104301--104360	29	2.0	30	93	3	104	35	3	20	41	1.68
108111--108145	3	11.7	3	100	0	70	34	0	65	0	0.93
110184--110236	28	1.9	27	84	3	70	43	7	3	45	1.50
110212--110243	11	2.9	11	90	0	55	43	0	3	53	1.16
111500--111584	3	28.7	3	95	2	154	35	0	0	64	0.94
111580--111609	11	2.8	11	95	5	53	56	0	0	43	0.99
113068--113232	90	1.9	88	80	2	195	40	12	10	37	1.77
113720--113760	18	2.3	18	91	8	66	21	2	0	75	0.92
113719--113768	18	2.8	18	75	19	52	24	2	0	74	0.93
115183--115224	15	3.0	14	83	10	50	19	19	7	54	1.66
120727--121121	83	4.7	83	93	1	648	28	12	22	37	1.90
121863--122635	113	6.9	113	95	1	1324	39	15	18	27	1.90
121862--122635	336	2.3	338	93	3	1317	39	15	18	27	1.90
122955--123049	3	31.7	3	91	0	154	34	3	0	62	1.11
122954--123061	9	11.1	9	80	14	90	37	2	0	59	1.12
123045--123074	11	2.8	11	95	5	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124535--124699	90	1.9	88	80	2	195	41	10	10	37	1.74
126200--126408	24	8.7	24	81	8	165	26	15	33	24	1.95
126186--126324	72	1.9	72	82	2	172	26	14	31	27	1.95
128709--128763	28	2.0	28	100	0	110	45	7	21	25	1.77
132119--132268	60	2.5	61	76	9	146	32	19	7	40	1.79
132402--132555	60	2.6	60	79	8	154	40	7	21	31	1.80
137664--137708	22	2.0	22	100	0	90	26	20	26	26	1.99
139182--141084	632	3.0	632	95	0	3387	36	14	14	33	1.88
142467--142533	34	1.9	35	90	3	109	32	5	20	40	1.77
150005--150108	3	34.7	3	79	3	66	39	0	54	5	1.24
149986--150112	36	3.5	36	83	7	157	43	0	50	5	1.31
156061--156188	60	2.1	59	81	8	143	36	12	14	35	1.84
161157--161193	18	2.1	18	100	0	74	51	10	10	27	1.70
161330--161363	16	2.1	16	94	0	59	52	17	2	26	1.58
161655--161790	73	1.9	73	87	0	200	45	4	4	45	1.43
161880--161906	13	2.1	13	100	0	54	37	18	7	37	1.79
166311--166385	22	3.3	22	81	10	89	49	13	13	24	1.77
166311--166398	44	2.0	46	81	4	108	48	13	13	23	1.78
168044--168113	34	2.1	32	86	5	95	22	30	15	31	1.95
168396--168437	21	2.0	21	95	0	75	26	28	21	23	1.99
168543--168609	19	3.5	19	91	0	89	35	13	10	40	1.79
168673--168763	31	3.0	31	96	3	168	42	17	6	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171569--172052	131	3.7	134	81	5	545	26	17	29	26	1.98
172014--172098	41	2.1	41	97	0	161	28	17	20	34	1.95
172448--172533	36	2.3	37	82	9	104	38	9	16	36	1.81
172480--172558	35	2.2	36	79	2	88	40	15	16	27	1.88
172849--172882	12	2.8	12	83	16	52	32	0	17	50	1.47
172856--172886	16	1.9	16	93	0	53	29	0	19	51	1.47
173554--175397	740	2.5	735	95	1	3300	31	17	16	34	1.92
175835--175881	21	2.2	21	92	0	85	21	25	27	25	1.99
180474--180507	3	11.0	3	93	6	59	64	0	0	35	0.94

Tables:   1

The End!