Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006888.1 Hibiscus syriacus cultivar Beakdansim tig00017572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68145

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1445--1484
11
3.6
11
80
12
55
82
5
2
10
0.91
1443--1484
22
2.0
22
90
4
68
83
4
2
9
0.88
8612--8691
24
3.5
22
75
14
83
22
23
23
30
1.99
8909--8971
19
3.2
19
75
4
54
55
12
0
31
1.37
12605--12643
16
2.4
16
95
0
69
17
28
15
38
1.91
12824--12850
13
2.1
13
100
0
54
55
0
0
44
0.99
12890--12936
14
3.7
14
71
26
50
44
0
4
51
1.21
12889--12938
23
2.1
24
96
3
93
48
0
4
48
1.20
13411--13489
20
3.7
20
70
23
70
26
25
0
48
1.52
13564--13591
2
14.0
2
100
0
56
50
0
0
50
1.00
13670--13730
2
31.0
2
80
3
70
52
3
1
42
1.27
13783--13857
2
39.5
2
87
10
113
48
0
0
52
1.00
13945--13978
17
1.9
17
88
5
50
47
0
26
26
1.53
14215--14255
21
2.0
21
90
0
64
48
24
0
26
1.51
14268--14333
18
3.6
19
76
19
68
46
7
4
40
1.52
14286--14339
2
26.0
2
81
7
63
48
5
1
44
1.37
14484--14586
25
4.2
26
69
16
67
42
3
2
50
1.35
14500--14535
15
2.4
15
90
0
54
38
2
5
52
1.39
14451--14595
74
2.0
73
87
6
213
44
3
2
49
1.33
14577--14786
13
16.0
13
68
21
93
44
3
4
47
1.40
14577--14759
96
1.9
95
95
2
303
44
3
5
46
1.44
14615--14771
18
8.3
18
71
18
97
43
2
5
48
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14599--14794
49
4.0
48
73
20
167
45
2
4
47
1.35
16308--16360
22
2.4
22
96
0
97
18
28
18
33
1.95
21785--21819
15
2.2
17
90
10
56
62
0
0
37
0.95
22220--22268
21
2.3
21
85
0
62
18
2
8
71
1.21
30894--30957
3
22.0
3
78
12
71
60
1
0
37
1.06
30894--30957
11
5.8
11
78
12
69
60
1
0
37
1.06
31082--31185
46
2.3
45
93
5
174
33
20
22
24
1.97
31118--31543
76
5.6
76
97
0
782
34
21
20
23
1.97
32219--32273
22
2.5
22
84
0
74
38
12
10
38
1.79
34933--35393
93
5.0
93
94
1
773
36
21
13
28
1.91
35048--35192
45
3.2
45
61
13
105
37
17
13
31
1.88
37297--37336
2
20.0
2
100
0
80
50
0
0
50
1.00
43849--43914
3
22.0
3
79
11
73
60
1
0
37
1.06
43845--43914
24
2.8
25
93
6
115
58
1
0
40
1.07
48887--48915
10
2.9
10
100
0
58
27
20
10
41
1.85
49442--49475
2
17.0
2
100
0
68
50
0
0
50
1.00
61445--61501
28
2.0
28
89
0
87
10
7
17
64
1.46
61445--61485
14
2.9
15
75
10
50
9
4
17
68
1.35
61668--61704
10
3.7
10
85
0
56
18
13
10
56
1.66
61704--61790
24
3.7
24
90
1
131
12
13
17
56
1.68
64128--64237
36
3.1
35
65
23
93
36
23
12
27
1.91

Tables:   1

The End!