Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000689.1 Hibiscus syriacus cultivar Beakdansim tig00001345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76884

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2172--2235
21
3.3
21
64
31
61
23
28
34
14
1.93
2137--2242
36
3.0
36
92
1
178
22
30
30
16
1.96
9046--9117
36
2.0
36
94
5
128
20
30
30
18
1.96
15926--15996
35
2.0
36
91
2
117
22
29
30
16
1.96
18781--18839
20
2.9
21
73
16
61
42
0
1
55
1.09
26379--26408
3
10.0
3
92
0
51
30
0
3
66
1.07
28045--28096
18
2.9
17
85
5
68
26
32
15
25
1.95
28197--28236
20
1.9
22
90
10
66
37
37
10
15
1.80
29491--29546
3
19.0
3
83
10
71
67
1
30
0
1.01
30879--30916
20
1.9
20
88
0
58
39
13
10
36
1.79
31238--31277
21
1.9
21
89
0
62
30
10
10
50
1.69
31575--31628
18
2.9
18
88
2
81
22
37
16
24
1.94
31659--31700
21
2.0
21
95
0
75
30
23
26
19
1.98
31729--31768
20
1.9
22
90
10
66
37
40
10
12
1.77
35247--35339
16
5.8
16
78
10
82
64
2
1
32
1.12
35326--35384
27
2.2
27
82
14
70
52
0
3
44
1.17
35261--35458
32
6.2
32
70
17
103
56
0
3
39
1.19
36670--36701
16
2.0
16
93
0
55
25
21
12
40
1.88
39628--39679
18
3.1
18
79
17
58
36
1
0
61
1.07
43996--44061
24
2.8
24
72
19
75
25
25
25
22
2.00
43999--44092
47
2.0
47
83
4
118
29
23
23
23
1.99
44977--45284
150
2.1
149
95
0
553
34
21
16
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51919--51963
23
2.0
23
90
0
72
26
26
24
22
2.00
54805--54848
21
2.1
21
83
4
54
38
18
0
43
1.50
59885--59928
2
22.0
2
90
0
70
45
4
0
50
1.22
60549--60626
27
2.9
27
98
0
147
32
11
32
24
1.91
60898--60956
29
2.0
29
100
0
118
49
13
13
23
1.78
72958--73681
359
2.0
359
96
0
1331
30
21
23
24
1.99

Tables:   1

The End!