genome.fa.s6891.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006891.1 Hibiscus syriacus cultivar Beakdansim tig00017584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158581

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7970--8001	15	2.1	15	100	0	64	18	6	25	50	1.70
9771--9822	27	1.9	27	88	0	77	46	13	9	30	1.75
11859--11976	60	2.0	60	83	3	148	32	15	17	34	1.91
12554--12592	18	2.2	18	85	0	51	33	0	2	64	1.08
15334--15377	21	2.1	21	82	0	52	52	27	0	20	1.47
29506--29556	2	25.5	2	100	0	102	50	0	0	49	1.00
30056--30570	252	2.0	252	96	1	953	58	4	12	24	1.52
30362--30987	200	3.1	201	94	3	1071	58	4	10	26	1.49
32478--33252	105	7.4	105	98	0	1487	23	18	25	32	1.97
44626--45216	206	2.9	204	94	4	1016	58	4	10	26	1.50
46240--46287	18	2.8	18	81	6	55	56	6	0	37	1.25
52442--52482	20	2.0	20	100	0	82	53	14	4	26	1.61
57599--57651	18	3.0	17	78	8	52	47	0	1	50	1.12
69494--69538	21	2.1	21	87	0	63	31	28	24	15	1.96
71225--71287	13	5.5	13	65	27	52	19	26	26	26	1.99
71221--71301	22	3.6	22	96	1	144	18	27	29	24	1.98
76580--76614	2	17.5	2	100	0	70	51	0	0	48	1.00
76614--76644	2	15.5	2	100	0	62	51	0	48	0	1.00
83906--83993	42	2.0	43	86	6	124	34	15	10	39	1.82
85322--85370	23	2.1	23	88	0	71	53	12	20	14	1.73
87145--87180	19	2.0	18	89	10	56	33	8	2	55	1.44
88598--88637	2	20.0	2	84	0	53	50	7	0	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93828--93867	2	20.0	2	100	0	80	50	0	0	50	1.00
107472--107509	7	5.4	7	100	0	76	47	39	0	13	1.42
118034--118096	6	10.7	6	98	1	119	50	17	14	17	1.78
118435--118733	6	49.8	6	98	0	571	34	33	15	16	1.91
118726--118768	6	7.2	6	97	0	77	51	18	0	30	1.47
120766--120885	15	7.5	15	73	19	91	43	0	4	52	1.20
120835--120995	32	5.3	32	84	13	241	36	0	10	53	1.36
120856--120960	55	1.9	55	100	0	210	34	0	11	54	1.37
120835--121027	87	2.2	86	97	0	359	36	0	10	53	1.35
120975--121017	22	2.0	22	100	0	86	34	0	13	51	1.42
121042--121100	31	1.9	31	86	6	84	44	8	5	42	1.57
133455--133487	17	1.9	17	88	11	50	51	6	0	42	1.26
135058--135127	14	4.8	15	75	20	60	51	1	0	47	1.09
135058--135130	15	5.0	15	82	12	89	52	1	0	46	1.09
135058--135172	15	7.5	14	73	24	74	46	0	2	49	1.21
135176--135217	22	1.9	22	95	0	75	38	0	14	47	1.44
135220--135267	22	2.4	18	73	23	51	33	0	14	52	1.42
135276--135468	32	6.7	31	82	16	188	34	0	11	53	1.38
135340--135404	22	3.0	22	93	0	112	35	0	10	53	1.36
135448--135643	22	8.0	22	69	19	104	33	0	13	52	1.41
135340--135677	131	2.6	129	80	9	400	34	0	12	53	1.39
135309--135899	239	2.4	241	90	6	912	34	0	13	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135627--135707	32	2.5	32	97	0	153	35	0	9	54	1.34
135646--135702	18	3.4	17	70	20	57	33	0	10	56	1.34
135627--135706	14	5.0	16	69	22	69	35	0	10	55	1.34
135548--135787	108	2.2	108	90	3	372	35	0	12	52	1.39
135366--135884	80	6.4	82	85	10	632	33	0	13	52	1.41
135847--135889	22	2.0	22	100	0	86	34	0	13	51	1.42
142179--142292	31	3.7	31	93	0	201	39	15	19	25	1.91
145118--145162	21	2.1	21	91	0	72	24	31	22	22	1.99
145618--145646	6	4.8	6	100	0	58	17	17	65	0	1.27
145987--146034	2	24.0	2	100	0	96	50	0	0	50	1.00

Tables:   1

The End!