genome.fa.s6892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006892.1 Hibiscus syriacus cultivar Beakdansim tig00017586_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134713

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2103--2249	75	2.0	75	100	0	294	31	31	5	31	1.80
5530--5681	75	2.0	75	94	0	268	37	15	14	32	1.88
9494--9607	42	2.7	42	94	0	192	19	16	18	45	1.85
9794--9955	28	5.9	29	71	17	82	48	0	1	49	1.13
9852--9972	59	2.0	62	81	13	146	49	0	1	48	1.10
9958--10002	23	2.0	23	86	0	63	55	2	0	42	1.12
10364--10438	15	5.0	15	95	0	132	36	20	10	33	1.87
10366--10438	30	2.4	30	100	0	146	35	20	9	34	1.85
14602--14651	26	2.0	26	88	4	75	30	8	8	54	1.58
18355--18414	31	2.0	30	86	3	84	28	16	18	36	1.93
19163--19204	21	2.0	21	90	4	68	26	21	28	23	1.99
19167--19212	21	2.2	20	84	7	56	30	21	28	19	1.98
27311--27355	21	2.1	21	87	0	63	31	28	24	15	1.96
29036--29095	23	2.6	23	94	0	102	20	28	28	23	1.99
38199--38282	21	4.0	21	78	7	89	19	23	34	22	1.96
46798--46878	21	3.8	21	79	7	83	17	23	34	24	1.96
46819--46879	20	2.9	21	87	7	79	19	26	32	21	1.97
54263--54292	14	2.1	15	93	6	53	30	0	6	63	1.20
56463--56543	30	2.7	30	90	0	135	46	13	12	27	1.79
56665--56758	42	2.2	42	94	0	161	29	27	5	37	1.79
60501--60534	12	2.8	12	100	0	68	5	32	0	61	1.20
61066--61110	22	2.0	22	82	4	54	31	28	26	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62396--62613	103	2.1	103	95	0	391	25	12	23	37	1.91
62629--62697	23	3.0	23	93	0	111	20	26	26	27	1.99
64284--64326	12	3.7	12	78	6	52	34	18	13	32	1.90
64689--64802	31	3.7	31	79	11	103	45	4	4	45	1.43
64744--64795	21	2.5	20	77	17	52	46	3	0	50	1.20
64816--64845	14	2.1	14	100	0	60	50	0	0	50	1.00
67371--67423	22	2.3	23	81	15	65	43	26	0	30	1.55
67371--67429	24	2.6	23	81	13	68	42	27	0	30	1.56
68369--68648	42	6.7	42	89	0	400	23	20	27	29	1.98
72932--72984	16	3.1	18	70	25	51	60	1	1	35	1.19
73453--73508	2	27.5	2	92	3	94	50	0	1	48	1.11
99778--99803	12	2.2	12	100	0	52	38	15	26	19	1.91
103947--104000	20	2.8	19	76	21	58	55	0	1	42	1.10
104330--104388	29	2.0	30	83	9	77	61	3	6	28	1.38
105590--105636	3	17.0	3	83	16	57	68	2	0	29	1.02
105577--105640	13	4.9	13	75	9	51	64	1	0	34	1.03
105592--105639	16	3.1	15	81	3	60	68	2	0	29	1.01
105591--105655	19	3.7	18	75	18	57	72	3	0	24	0.99
105591--105656	32	2.1	32	85	5	89	72	3	0	24	0.98
106185--106448	54	4.9	54	87	0	366	23	22	16	37	1.94
106185--106448	108	2.4	108	92	0	429	23	22	16	37	1.94
108640--108854	114	1.9	114	94	1	378	31	20	15	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110460--110531	24	3.0	24	79	2	83	51	18	8	22	1.72
111468--111503	18	2.0	18	88	0	54	30	16	0	52	1.44
112818--112863	18	2.6	18	96	0	83	10	21	50	17	1.77
112812--112841	13	2.3	13	94	0	51	16	23	43	16	1.87
115033--115084	17	3.2	16	89	10	79	0	19	0	80	0.71
115068--115140	25	2.8	25	93	4	119	4	17	8	69	1.29
117798--117915	32	3.7	31	79	11	132	33	16	16	33	1.92
117781--117935	63	2.5	63	94	0	274	32	18	16	32	1.93
117746--117932	31	5.9	32	75	10	163	32	18	17	32	1.94
120377--120418	7	6.0	7	78	10	50	54	14	16	14	1.71
121900--121957	28	2.2	26	84	6	71	60	1	5	32	1.29
122561--122620	19	3.1	20	75	20	65	58	0	1	40	1.08
122952--122999	14	3.4	14	77	11	53	64	0	4	31	1.12
122943--122999	28	2.0	29	89	3	89	61	1	7	29	1.32
123662--123708	3	17.0	3	83	16	57	68	2	0	29	1.02
123664--123711	16	3.1	15	81	3	60	68	2	0	29	1.01
133960--134004	22	2.1	21	87	4	63	44	8	15	31	1.77

Tables:   1

The End!