genome.fa.s6893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006893.1 Hibiscus syriacus cultivar Beakdansim tig00017595_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155410

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4339--4383	15	3.0	15	96	0	81	33	11	20	35	1.88
4591--4642	28	1.9	26	84	7	68	42	0	0	57	0.98
4733--4917	10	19.5	10	62	22	51	49	0	1	48	1.12
4766--4862	27	3.6	25	79	8	95	49	1	0	49	1.07
4757--4805	19	2.6	19	75	12	55	51	0	0	48	1.00
5099--5210	40	2.7	41	93	2	181	45	19	16	18	1.85
8977--9127	75	2.0	74	93	1	257	32	14	15	37	1.88
12419--12568	75	2.0	75	100	0	300	32	6	30	30	1.83
17136--17175	21	1.9	21	89	0	62	30	7	7	55	1.56
19155--19196	20	2.2	19	86	4	57	11	23	38	26	1.90
21347--21390	19	2.3	19	88	0	61	27	9	31	31	1.88
21355--21399	19	2.4	19	92	0	81	22	8	35	33	1.85
23006--23143	72	1.9	72	86	5	199	54	14	10	21	1.69
23006--23153	24	6.2	24	82	3	156	54	14	10	20	1.69
27027--27109	29	2.8	29	78	8	87	39	4	16	38	1.70
28253--28290	2	19.0	2	89	10	60	47	2	0	50	1.15
50796--50876	28	2.9	29	81	3	76	43	18	6	32	1.75
50796--50977	29	6.3	29	75	10	126	43	20	6	28	1.77
57938--58058	29	4.3	28	77	5	109	39	20	6	33	1.79
58181--58217	11	3.7	10	89	10	58	32	24	21	21	1.98
60981--61019	21	2.0	21	85	10	55	51	10	2	35	1.50
61808--61862	27	2.0	27	100	0	110	32	29	3	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78213--78245	17	1.9	17	93	0	57	33	3	33	30	1.73
81090--81146	14	4.4	14	76	17	59	14	12	15	57	1.65
81094--81145	24	2.2	24	89	0	77	15	11	13	59	1.61
82033--82076	23	1.9	23	90	0	70	11	6	18	63	1.48
83555--83584	15	2.0	15	100	0	60	60	0	20	20	1.37
83558--83592	15	2.3	15	90	0	52	65	0	17	17	1.27
83687--83712	9	2.9	9	100	0	52	80	0	19	0	0.71
83728--83803	29	2.6	30	76	19	81	72	0	2	25	0.98
84253--84321	34	2.0	34	91	0	111	33	13	11	42	1.80
84917--85175	98	2.6	98	82	5	277	20	21	24	34	1.97
84917--85309	105	3.8	102	77	7	316	21	20	24	33	1.97
85979--86106	31	3.9	31	72	17	82	34	12	20	32	1.90
85881--86073	67	2.8	67	80	3	224	38	10	20	30	1.87
86028--86142	33	3.5	33	89	5	162	32	11	19	37	1.87
86183--86625	37	13.0	37	68	20	172	38	11	18	31	1.86
86183--86639	36	13.4	36	69	18	173	38	11	18	31	1.87
86311--86367	30	1.9	30	85	7	80	35	10	14	40	1.80
86324--86728	102	4.0	102	91	2	627	37	12	19	31	1.88
86324--86722	202	2.0	204	91	2	651	36	12	19	31	1.89
86555--86640	37	2.4	37	84	2	102	40	11	19	27	1.86
87926--88275	183	1.9	183	95	0	637	29	21	21	27	1.98
92173--92202	15	2.0	15	93	0	51	60	0	16	23	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92309--92334	9	2.9	9	100	0	52	80	0	19	0	0.71
92351--92419	29	2.4	28	86	11	95	73	0	1	24	0.91
92351--92444	30	3.1	31	82	16	108	70	0	1	28	0.94
92290--92415	6	19.3	6	70	24	53	76	0	5	17	1.03
92357--92436	36	2.2	36	84	10	101	68	0	1	30	0.97
92330--92419	24	3.5	24	71	26	69	74	1	2	22	0.99
92357--92491	40	3.6	38	77	13	118	66	1	1	30	1.09
92864--92932	34	2.0	34	91	0	111	33	13	11	42	1.80
93763--93794	16	2.0	16	93	0	55	71	0	3	25	1.00
100320--100368	22	2.2	22	92	0	80	32	16	28	22	1.95
100853--100899	15	3.3	15	82	11	71	21	0	0	78	0.75
100837--100899	28	2.3	27	88	2	90	23	0	1	74	0.90
100849--100892	23	1.9	23	86	9	63	25	0	0	75	0.81
100849--100882	8	4.4	8	92	7	61	23	0	0	76	0.79
101150--101211	16	3.3	19	76	17	67	72	1	0	25	0.94
115555--115614	16	3.8	16	77	0	66	58	21	8	11	1.59
116690--116740	24	2.1	24	88	0	75	54	21	11	11	1.68
122760--122917	21	7.8	20	72	7	86	38	25	17	18	1.92
122884--123077	20	9.6	20	80	5	212	35	25	19	19	1.95
122884--123077	60	3.2	60	81	3	237	35	25	19	19	1.95
123460--123530	33	2.2	33	92	0	115	11	22	18	47	1.80
123608--123685	41	1.9	41	91	0	129	43	16	25	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123609--123684	21	3.7	21	83	3	100	44	17	25	13	1.84
123664--123728	33	2.0	33	90	0	103	43	21	23	12	1.86
123699--123730	14	2.3	14	94	0	55	50	21	21	6	1.71
123669--123741	33	2.2	33	87	0	101	45	23	20	10	1.83
123759--123848	14	5.7	14	72	23	72	8	24	23	43	1.82
123742--123856	33	3.5	33	96	0	212	10	23	20	46	1.81
123737--123834	19	5.7	19	69	22	81	11	23	21	43	1.84
125555--125797	93	2.6	93	99	0	477	22	13	18	44	1.85
127526--127561	14	2.6	14	95	0	63	33	0	22	44	1.53
127668--127765	19	5.4	19	84	13	143	45	17	22	14	1.84
127668--127783	53	2.2	53	98	1	225	43	18	24	13	1.86
127790--128080	33	8.5	33	74	15	243	13	21	17	46	1.83
127812--128080	19	15.4	19	76	18	282	13	21	17	47	1.82
127790--128052	52	5.0	52	97	0	499	13	22	16	46	1.82
130361--130385	12	2.1	12	100	0	50	0	28	0	72	0.86
130559--130605	24	2.0	24	87	8	69	38	21	14	25	1.92
131288--131517	20	11.5	20	84	1	228	20	18	24	36	1.94
131504--131586	21	4.0	21	73	6	78	25	16	24	33	1.96
131484--131582	42	2.4	43	77	11	100	21	18	23	37	1.94
143342--143422	41	2.0	41	95	2	146	34	16	14	34	1.89
147952--148023	36	2.0	36	86	10	103	47	13	5	33	1.67
147952--148023	37	2.0	35	89	5	108	47	13	5	33	1.67

Tables:   1

The End!