genome.fa.s6895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006895.1 Hibiscus syriacus cultivar Beakdansim tig00017599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162710

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7777--7834	21	2.7	23	77	20	63	65	3	3	27	1.25
10882--10927	12	3.9	12	77	11	51	0	8	52	39	1.33
11419--11518	42	2.4	42	81	5	114	31	19	20	30	1.96
11382--11943	275	2.0	275	87	3	808	34	19	16	29	1.94
11830--11971	57	2.6	53	77	11	146	39	16	12	30	1.86
13118--13204	10	8.1	10	80	14	77	4	11	1	82	0.86
13115--13204	11	7.9	11	78	10	74	4	12	1	82	0.87
13126--13204	23	3.5	22	83	10	97	5	10	1	83	0.85
16211--16456	44	5.6	44	89	2	345	20	26	22	30	1.98
16211--16497	87	3.3	88	84	2	346	21	26	21	30	1.98
16213--16456	131	1.9	131	86	3	357	20	26	22	30	1.98
16211--16497	131	2.2	131	81	5	339	21	26	21	30	1.98
20188--20230	21	2.2	19	83	8	50	18	13	6	60	1.55
21691--21735	21	2.1	21	84	8	56	15	20	6	57	1.60
23119--23213	6	13.7	7	75	19	58	77	0	21	1	0.82
23095--23205	37	3.1	37	76	6	102	77	0	19	1	0.91
23085--23215	15	8.5	15	71	16	83	76	1	20	1	0.95
23148--23216	6	11.8	6	78	17	65	82	0	17	0	0.67
23114--23211	9	11.1	9	74	13	62	78	0	20	1	0.81
23828--23902	27	2.7	27	88	8	107	40	32	4	24	1.73
25187--25309	55	2.3	54	82	2	140	37	8	13	40	1.75
25228--25333	53	2.0	55	84	3	144	34	10	13	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25218--25339	53	2.3	55	80	5	142	32	9	11	45	1.73
25561--25658	42	2.3	42	98	0	187	24	21	18	35	1.95
25594--25657	20	3.1	20	70	16	67	25	20	18	35	1.95
25666--26029	144	2.6	141	84	1	496	25	27	15	32	1.96
25911--26124	84	2.5	84	87	3	304	25	26	16	31	1.96
27238--27561	136	2.4	136	77	8	341	36	16	19	26	1.94
31394--31418	13	1.9	13	100	0	50	40	0	0	60	0.97
31468--31502	16	2.1	18	89	10	56	34	0	0	65	0.93
31479--31531	16	3.2	16	84	12	63	22	0	5	71	1.06
31904--31946	22	1.9	23	90	4	70	48	2	0	48	1.14
31992--32060	29	2.2	33	85	10	92	50	7	1	40	1.39
32302--32378	26	3.0	26	72	16	72	51	0	1	46	1.09
32318--32372	23	2.3	24	84	6	67	49	0	1	49	1.11
33417--33460	14	3.1	14	73	0	52	47	0	4	47	1.22
34078--34191	26	4.4	26	70	23	87	42	1	0	56	1.10
34079--34191	52	2.2	52	80	16	128	41	1	0	56	1.09
34087--34191	24	4.2	26	80	11	96	41	1	0	56	1.10
34256--34327	29	2.5	28	82	8	83	56	1	6	34	1.35
34972--35045	31	2.4	31	83	2	94	47	12	12	28	1.77
36231--36284	22	2.5	22	81	0	63	53	5	3	37	1.42
36832--36879	11	4.6	10	77	10	51	66	4	0	29	1.10
45649--46490	417	2.0	416	84	6	1098	38	9	7	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47065--47095	15	2.1	15	93	0	53	25	35	0	38	1.56
47934--47967	2	17.5	2	87	6	52	50	0	0	50	1.00
50987--51030	21	2.1	21	95	0	79	56	9	15	18	1.65
51668--51711	22	2.0	22	86	4	61	72	4	0	22	1.02
52676--52724	24	2.1	23	84	3	62	24	0	6	69	1.11
57669--57715	22	2.3	20	82	13	60	36	6	4	53	1.46
58099--58183	39	2.4	34	81	13	84	41	14	11	32	1.82
58220--58353	33	4.1	31	74	12	101	52	7	4	35	1.50
58323--58385	32	2.0	32	84	6	85	53	6	7	31	1.55
60070--60114	18	2.5	18	88	0	63	48	13	28	8	1.72
63095--63138	13	3.4	13	93	0	70	31	20	15	31	1.94
74094--74225	66	2.0	66	100	0	264	30	16	16	36	1.91
74999--75028	15	1.9	16	93	6	53	70	6	0	23	1.11
81461--81502	19	2.4	17	84	11	50	52	0	9	38	1.34
81469--81507	19	2.2	17	86	13	53	38	0	12	48	1.42
83576--83611	3	12.0	3	100	0	72	33	0	0	66	0.92
89579--89683	30	3.6	29	77	1	93	40	18	19	22	1.92
90258--90310	13	4.2	13	82	4	63	35	18	26	18	1.95
90711--90752	19	2.3	18	95	4	75	61	9	16	11	1.55
90711--90748	17	2.1	18	90	9	60	60	10	18	10	1.57
100273--100317	20	2.3	19	84	3	54	35	24	2	37	1.68
102071--102223	61	2.5	60	87	2	216	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103659--103704	20	2.3	20	81	3	58	36	26	0	36	1.57
104967--105015	13	3.7	13	86	5	71	36	20	2	40	1.64
113227--113327	37	2.7	37	82	0	121	30	14	18	35	1.92
120205--120333	42	3.1	42	90	0	213	38	21	11	27	1.88
131983--132045	25	2.6	24	82	9	74	55	1	7	34	1.39
136701--136759	2	29.5	2	100	0	118	49	0	0	50	1.00
146295--146337	22	2.0	22	86	9	61	55	4	6	32	1.47
147931--147981	3	17.3	3	79	4	50	56	7	1	33	1.39
148237--148304	18	3.9	18	75	9	70	39	7	14	38	1.74

Tables:   1

The End!