Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01006896.1 Hibiscus syriacus cultivar Beakdansim tig00017612_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 144751
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


File 2 of 2

Found at i:137501 original size:53 final size:55

Alignment explanation


    Indices: 137438--137566  Score: 217
    Period size: 53  Copynumber: 2.4  Consensus size: 55

     137428 ATTATTTATC

                                                                   
     137438 GAATGCTTTGTTACTCGTGTTTGATATGTATGTCCGACACCACCTCGAG-CT-AG
          1 GAATGCTTTGTTACTCGTGTTTGATATGTATGTCCGACACCACCTCGAGACTGAG

                                         *             *      *    
     137491 GAATGCTTTGTTACTCGTGTTTGATATGTGTGTCCGACACCACGTCGAGATTGAG
          1 GAATGCTTTGTTACTCGTGTTTGATATGTATGTCCGACACCACCTCGAGACTGAG

                                 
     137546 GAATGCTTTGTTACTCGTGTT
          1 GAATGCTTTGTTACTCGTGTT

     137567 CGATTCGTGT


Statistics
Matches: 71,  Mismatches: 3, Indels: 2
        0.93            0.04        0.03

Matches are distributed among these distances:
  53   47  0.66
  54    1  0.01
  55   23  0.32

ACGTcount: A:0.19, C:0.19, G:0.25, T:0.36


Consensus pattern (55 bp):   
GAATGCTTTGTTACTCGTGTTTGATATGTATGTCCGACACCACCTCGAGACTGAG

Found at i:137577 original size:53 final size:51

Alignment explanation


    Indices: 137438--137593  Score: 199
    Period size: 53  Copynumber: 3.0  Consensus size: 51

     137428 ATTATTTATC

                                                                 
     137438 GAATGCTTTGTTACTCGTGTTTGATATGTATGTCCGACACCACCTCGAGCTAG
          1 GAATGCTTTGTTACTCGTGTTTGATATG--TGTCCGACACCACCTCGAGCTAG

                                                       *      *    
     137491 GAATGCTTTGTTACTCGTGTTTGATATGTGTGTCCGACACCACGTCGAGATTGAG
          1 GAATGCTTTGTTACTCGTGTTTGATA--TGTGTCCGACACCACCTCGAG-CT-AG

                                 *                   *        
     137546 GAATGCTTTGTTACTCGTGTTCGAT-TCGTGTCCGACACCAAC-CGAGCT
          1 GAATGCTTTGTTACTCGTGTTTGATAT-GTGTCCGACACCACCTCGAGCT

     137594 CGAGTTACGT


Statistics
Matches: 92,  Mismatches: 6, Indels: 12
        0.84            0.05        0.11

Matches are distributed among these distances:
  51    1  0.01
  52    5  0.05
  53   57  0.62
  54    1  0.01
  55   28  0.30

ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33


Consensus pattern (51 bp):   
GAATGCTTTGTTACTCGTGTTTGATATGTGTCCGACACCACCTCGAGCTAG

Done.