genome.fa.s6898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006898.1 Hibiscus syriacus cultivar Beakdansim tig00017617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99580

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2598--3058	147	3.1	149	94	2	806	34	20	16	29	1.94
4397--4555	63	2.5	63	87	0	210	27	22	19	31	1.98
4523--4560	19	2.0	20	94	5	69	26	28	15	28	1.96
7669--8132	149	3.1	149	97	0	856	34	21	15	28	1.94
9491--9649	63	2.5	63	86	0	201	27	21	19	31	1.97
25454--25532	10	8.3	9	75	9	68	17	27	27	26	1.98
25443--25530	19	4.6	20	76	13	78	18	26	27	28	1.98
25451--25532	29	2.9	28	83	5	92	18	28	26	26	1.98
25528--25610	12	7.4	12	74	15	61	18	46	24	10	1.80
25541--25603	5	11.8	5	77	12	63	19	50	22	7	1.72
25529--25610	22	3.7	22	95	0	146	18	47	24	9	1.78
32784--32862	10	8.3	9	80	9	86	15	29	29	26	1.96
32783--32860	19	4.1	19	82	14	97	16	26	29	26	1.97
32773--32862	29	3.1	29	85	9	121	15	28	27	27	1.96
32871--32933	5	11.8	5	80	12	72	19	52	22	6	1.68
32859--32940	22	3.7	22	98	0	155	18	48	24	8	1.75
35660--35749	39	2.2	41	84	7	112	30	14	7	47	1.72
35683--35771	43	2.1	42	85	2	115	30	16	5	47	1.70
40938--40972	12	2.9	12	82	0	52	54	0	34	11	1.37
44103--44191	31	2.9	31	98	0	169	21	15	21	41	1.90
46220--46286	30	2.2	29	82	10	73	43	0	4	52	1.21
46442--46504	23	2.7	23	87	0	90	38	20	6	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46855--46932	23	3.5	20	73	19	57	41	21	3	33	1.72
46870--46927	23	2.5	23	94	0	98	37	20	5	36	1.75
47078--47144	30	2.2	29	82	10	73	43	0	4	52	1.21
46082--47563	428	3.5	430	98	0	2864	38	12	7	41	1.71
47289--47360	23	3.2	22	88	4	99	38	22	4	34	1.73
47783--47868	39	2.2	39	93	0	145	18	13	18	48	1.80
48124--48160	18	2.1	18	89	0	56	51	10	5	32	1.60
48598--48661	23	2.8	23	92	0	101	39	20	4	35	1.73
49004--49069	25	2.6	25	80	0	87	42	13	9	34	1.76
51539--52029	183	2.7	183	94	1	853	33	17	14	34	1.90
53534--53634	12	8.4	12	86	0	112	20	34	7	36	1.82
53534--53637	6	17.3	6	79	0	82	20	34	7	37	1.81
55100--56866	199	8.9	199	97	0	3301	31	17	14	36	1.90
55599--55636	15	2.5	15	80	16	51	18	10	23	47	1.79
56195--56232	15	2.5	15	80	16	51	18	10	23	47	1.79
55100--56866	596	3.0	597	97	0	3319	31	17	14	36	1.90
56985--57033	19	2.6	19	93	0	80	57	10	2	30	1.43
58823--58888	33	2.0	33	90	0	105	22	48	0	28	1.51
58922--58965	21	2.1	21	91	0	70	15	31	11	40	1.83
61181--61223	20	2.3	18	85	14	61	20	16	11	51	1.75
61186--61232	20	2.4	19	82	10	67	19	17	10	53	1.72
61367--61412	20	2.3	19	89	10	74	17	15	10	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61462--62171	228	3.1	228	96	2	1305	39	8	7	44	1.63
64151--64180	15	2.0	15	93	0	51	56	0	0	43	0.99
67564--67606	19	2.3	19	83	0	59	32	2	4	60	1.30
70026--70184	79	2.0	79	97	0	300	35	20	12	31	1.90
74428--74560	69	1.9	69	96	0	248	37	18	15	27	1.92
76949--77224	153	1.8	153	86	1	401	36	14	22	25	1.93
79169--79262	35	2.7	36	83	6	122	40	25	1	32	1.63
80060--80216	65	2.4	63	77	9	156	34	21	16	28	1.95
85575--85604	15	2.0	15	93	0	51	36	16	6	40	1.75
86003--86081	23	3.5	22	77	6	88	27	22	20	29	1.98
86576--86600	13	1.9	13	100	0	50	32	8	4	56	1.47
89617--89880	146	1.8	147	89	2	424	48	9	4	37	1.56
89999--90066	35	1.9	35	96	0	127	35	1	22	41	1.63
90315--90374	29	2.1	29	100	0	120	46	15	16	21	1.83
91865--91978	59	1.9	61	80	10	137	47	13	9	29	1.74
92383--92501	60	2.0	60	84	0	157	28	20	17	33	1.95

Tables:   1

The End!