Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000069.1 Hibiscus syriacus cultivar Beakdansim tig00000120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86462

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2639--2665
14
1.9
14
100
0
54
59
7
0
33
1.25
3260--3297
16
2.3
17
81
9
51
60
0
5
34
1.19
3448--3502
22
2.4
22
82
14
67
63
0
3
32
1.12
4959--5021
3
20.7
3
77
9
56
57
0
0
42
0.99
5048--5272
46
4.9
46
83
0
279
43
14
20
22
1.88
5968--6005
19
2.0
19
89
0
58
60
5
7
26
1.46
10785--10819
13
2.6
13
86
4
52
57
0
2
40
1.14
15631--15656
2
13.0
2
100
0
52
50
0
0
50
1.00
20466--20495
15
1.9
16
93
6
53
63
0
0
36
0.95
20752--20785
2
17.0
2
100
0
68
50
0
0
50
1.00
21803--21837
13
2.6
13
86
4
52
57
0
2
40
1.14
24984--25038
25
2.2
25
90
0
83
21
27
18
32
1.96
28075--28101
2
13.5
2
100
0
54
51
0
0
48
1.00
29085--29157
3
23.7
3
82
13
78
61
0
1
36
1.05
31249--31310
10
6.6
10
80
15
62
6
19
0
74
1.03
31251--31337
19
4.9
18
79
9
90
4
19
0
75
0.97
31287--31353
25
2.7
24
84
9
80
5
19
0
74
1.02
31278--31371
16
6.3
15
73
22
58
6
18
0
75
1.01
31278--31368
9
10.6
8
75
17
69
6
18
0
74
1.02
32527--32604
3
26.0
3
81
10
88
58
0
1
39
1.06
32857--32915
17
3.4
17
70
25
59
15
23
11
49
1.77
33089--33139
17
3.1
17
72
16
61
21
21
9
47
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33090--33142
16
3.2
16
71
12
54
20
22
9
47
1.79
32960--33372
221
1.8
223
87
4
607
28
20
14
37
1.91
32960--33373
113
3.7
113
84
7
547
28
20
14
37
1.91
33310--33411
40
2.5
40
92
3
161
17
20
8
52
1.71
33087--33644
267
2.1
267
88
4
824
27
18
13
40
1.88
33197--33527
154
2.2
153
91
0
518
25
19
12
43
1.85
33350--33765
119
3.5
120
89
5
553
26
18
13
41
1.88
35785--35948
78
2.1
78
100
0
328
29
23
14
32
1.94
40577--40628
13
4.0
13
87
0
77
32
17
23
26
1.96
42605--42654
20
2.5
19
84
12
57
28
8
28
36
1.85
43652--43676
7
3.6
7
100
0
50
44
0
0
56
0.99
47142--47176
17
2.1
17
88
0
52
45
0
2
51
1.16
48460--48523
9
7.2
9
75
8
51
53
0
0
46
1.00
48480--48519
15
2.7
15
88
0
62
52
0
0
47
1.00
49979--50026
19
2.4
19
86
6
60
45
0
2
52
1.12
50347--50382
19
1.9
19
88
5
56
19
2
5
72
1.17
51772--51853
31
2.7
29
74
22
71
71
1
2
24
1.05
51903--51932
4
7.2
4
96
3
51
70
0
0
30
0.88
54797--54839
6
6.8
6
94
5
68
0
13
0
86
0.58
54796--54841
7
7.0
7
90
9
71
0
15
0
84
0.62
54796--54841
13
3.5
13
88
11
76
0
15
0
84
0.62
62090--62391
151
2.0
152
99
0
597
24
19
15
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65521--65567
19
2.3
20
82
10
60
74
2
0
23
0.93
65524--65570
22
2.1
22
88
7
69
74
2
0
23
0.93
65524--65576
11
4.8
10
78
17
52
73
1
1
22
1.03
71770--72220
74
6.1
74
80
5
466
33
12
14
39
1.84
71770--72220
147
3.1
146
85
3
566
33
12
14
39
1.84
72210--72290
42
1.9
42
92
0
135
27
18
17
37
1.93
77714--77746
14
2.4
14
85
14
50
36
3
3
57
1.29
77913--77941
9
3.2
9
100
0
58
20
0
10
68
1.18
78013--78051
18
2.1
18
85
4
51
5
12
7
74
1.20
85890--85977
45
1.9
46
93
2
151
27
25
19
28
1.99

Tables:   1

The End!