Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000690.1 Hibiscus syriacus cultivar Beakdansim tig00001346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61087

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1128--1176
12
4.1
12
89
0
71
14
32
0
53
1.41
1128--1176
24
2.0
24
96
0
89
14
32
0
53
1.41
6263--6507
124
2.0
125
82
4
307
40
14
13
31
1.85
6172--6675
252
2.0
252
78
7
522
40
13
14
31
1.85
15868--15897
14
2.1
14
93
0
51
26
13
16
43
1.85
18563--18605
23
1.9
23
90
4
70
41
4
20
32
1.73
20310--20338
2
14.5
2
100
0
58
48
0
0
51
1.00
21792--21817
3
8.7
3
100
0
52
65
0
0
34
0.93
22007--22082
38
2.1
36
85
11
102
71
0
6
22
1.09
23147--23198
22
2.5
21
82
11
63
63
1
1
32
1.16
23266--23411
14
10.4
14
75
16
108
50
7
0
41
1.36
23274--23412
2
73.0
2
68
24
79
49
6
0
43
1.33
23275--23409
43
3.1
41
72
14
112
49
6
0
42
1.34
25122--25210
15
6.0
15
68
28
57
48
2
1
48
1.21
25116--25172
13
4.3
13
75
20
55
45
0
0
54
0.99
25425--25475
26
2.0
26
84
0
66
37
5
5
50
1.51
33026--33065
6
6.7
6
100
0
80
0
65
0
35
0.93
33286--33345
2
30.0
2
100
0
120
50
0
0
50
1.00
35747--35799
20
2.6
20
75
3
52
45
5
5
43
1.51
35885--35931
13
3.5
14
77
16
55
48
0
0
51
1.00
35892--35935
21
2.1
21
82
0
52
52
0
0
47
1.00
36406--36448
2
21.5
2
100
0
86
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37266--37353
32
2.7
31
74
19
81
25
13
19
42
1.88
40921--41194
106
2.6
106
91
0
413
22
20
22
34
1.97
41795--41880
32
2.7
32
87
3
93
38
19
9
32
1.84
42729--42866
69
2.0
69
92
0
231
26
15
21
36
1.93
42927--42994
8
8.0
8
78
16
59
2
13
2
80
0.93
42944--42989
13
3.5
13
84
0
65
0
10
2
86
0.64
52675--52712
11
3.5
11
85
7
51
57
5
13
23
1.56
55028--55073
24
1.9
24
100
0
92
30
13
15
41
1.85
56746--56831
32
2.7
31
75
21
88
43
20
11
24
1.85
58867--58936
3
22.0
3
91
2
86
40
0
0
60
0.97
58867--58945
12
6.2
12
77
11
77
41
0
0
58
0.98
60284--60499
116
1.9
113
80
9
249
37
9
7
46
1.64
60992--61047
21
2.5
22
85
11
69
25
1
0
73
0.93

Tables:   1

The End!