genome.fa.s6900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006900.1 Hibiscus syriacus cultivar Beakdansim tig00017620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79151

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4117--4166	24	2.0	25	92	3	84	0	8	8	84	0.79
4117--4166	18	2.7	19	82	14	52	0	8	8	84	0.79
10681--10731	24	2.1	24	81	0	57	37	13	17	31	1.89
16472--16612	36	3.9	36	88	0	201	27	36	4	30	1.78
20587--20727	36	3.9	36	87	0	192	27	36	4	31	1.78
26721--26888	90	1.9	90	94	1	302	44	5	12	37	1.65
37898--37968	17	4.1	18	78	8	58	36	12	8	42	1.73
40019--40132	46	2.5	46	95	0	201	18	20	16	44	1.87
40180--40379	46	4.3	46	87	0	256	25	18	12	45	1.83
40021--40334	159	2.0	159	82	1	387	23	18	14	43	1.87
40824--40870	18	2.6	18	96	0	85	34	31	12	21	1.91
40856--40907	21	2.5	21	96	0	95	34	21	11	32	1.89
47531--47573	23	1.9	21	81	13	50	34	13	18	32	1.90
48782--48821	21	2.0	20	85	5	53	0	22	2	75	0.93
48810--48860	25	2.1	25	85	7	70	13	11	13	60	1.59
54927--54959	2	17.0	2	87	6	50	48	3	0	48	1.17
59583--59614	17	1.9	16	93	6	55	71	0	15	12	1.14
62868--62904	2	18.5	2	89	10	58	51	2	0	45	1.15
65977--66019	15	2.9	15	100	0	86	60	0	27	11	1.31
66170--66205	15	2.4	15	90	9	56	66	0	25	8	1.19
66156--66210	25	2.1	26	87	12	78	61	0	25	12	1.31
65992--66324	178	1.9	178	91	0	549	41	9	22	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71737--71784	14	3.4	13	80	13	51	0	6	8	85	0.74
71753--71787	13	2.7	13	91	8	54	0	2	11	85	0.69
78295--78345	24	2.1	24	81	0	57	37	13	17	31	1.89

Tables:   1

The End!