genome.fa.s6901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006901.1 Hibiscus syriacus cultivar Beakdansim tig00017626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60531

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2468--2522	21	2.6	21	83	11	76	25	16	23	34	1.95
2543--2602	22	2.7	23	85	12	72	16	18	28	36	1.93
3529--3636	54	2.0	54	98	0	207	22	13	31	32	1.93
5893--6070	23	8.0	23	67	22	71	36	3	6	53	1.42
5894--6172	7	37.1	7	66	22	70	35	3	7	53	1.47
5948--6084	45	2.9	47	72	17	115	36	3	5	54	1.40
6019--6084	18	3.7	18	69	19	57	40	4	3	51	1.38
5906--6144	105	2.3	102	77	11	225	36	4	7	51	1.50
17095--17202	56	1.9	56	90	0	171	27	24	22	25	2.00
17151--17557	215	1.9	215	89	3	640	32	19	15	31	1.93
17578--17674	42	2.3	41	75	3	104	31	21	22	23	1.98
17367--17738	181	2.0	182	90	1	584	33	19	15	31	1.93
17549--18635	211	5.1	215	88	4	1572	32	19	15	32	1.93
17997--18103	42	2.6	41	77	2	115	30	21	21	26	1.98
18222--18310	42	2.1	41	87	2	124	34	19	21	24	1.96
17549--18635	417	2.6	421	87	4	1559	32	19	15	32	1.93
18641--19017	34	10.9	34	84	4	477	22	20	22	34	1.97
18641--19017	105	3.6	105	92	1	600	22	20	22	34	1.97
23191--23228	13	2.9	13	80	11	51	50	18	13	18	1.78
30039--30146	56	1.9	56	90	0	171	27	24	22	25	2.00
30095--30501	215	1.9	215	89	3	640	32	19	15	31	1.93
30522--30618	42	2.3	41	75	3	104	31	21	22	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30311--30682	181	2.0	182	90	1	584	33	19	15	31	1.93
30493--31579	211	5.1	215	88	4	1572	32	19	15	32	1.93
30941--31047	42	2.6	41	77	2	115	30	21	21	26	1.98
31166--31254	42	2.1	41	87	2	124	34	19	21	24	1.96
30493--31579	417	2.6	421	87	4	1559	32	19	15	32	1.93
31585--31961	34	10.9	34	84	4	477	22	20	22	34	1.97
31585--31961	105	3.6	105	92	1	600	22	20	22	34	1.97
36134--36171	13	2.9	13	80	11	51	50	18	13	18	1.78
42652--42702	1	51.0	1	90	0	66	0	3	3	92	0.48
42643--42699	10	5.7	10	83	6	53	0	5	7	87	0.66
42643--42702	30	2.0	30	90	0	93	0	5	6	88	0.63
42643--42702	31	1.9	31	93	0	102	0	5	6	88	0.63
42660--42703	23	1.9	23	95	0	79	0	4	6	88	0.62
44824--44860	15	2.5	15	100	0	74	62	0	37	0	0.96
44907--45066	44	3.4	43	82	17	203	37	0	11	50	1.44
44953--45081	54	2.4	52	94	2	222	35	0	12	51	1.39
45043--45073	16	1.9	16	93	0	53	22	0	16	61	1.34
45060--45104	23	2.0	23	90	0	72	28	0	15	55	1.41
45059--45288	67	3.3	66	80	12	259	34	0	13	51	1.42
45006--45497	75	6.7	75	75	17	426	35	0	12	51	1.45
44907--45151	44	5.6	44	72	24	198	36	0	12	50	1.44
45120--45174	23	2.4	23	93	3	94	27	0	16	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45005--45291	142	2.0	141	90	5	454	35	0	13	51	1.42
45142--45389	52	4.6	53	72	18	181	36	0	12	50	1.43
45083--45450	113	3.2	111	73	14	286	35	0	12	51	1.46
45206--45251	23	2.0	24	95	4	85	30	0	15	54	1.41
45142--45450	163	1.9	160	85	7	428	35	0	12	51	1.46
45230--45371	46	3.2	44	89	8	211	38	0	11	49	1.44
45083--45360	111	2.4	116	76	12	277	37	0	12	50	1.44
45364--45410	23	2.0	23	87	0	67	25	2	12	59	1.45
45419--45473	23	2.4	23	93	3	94	27	1	16	54	1.52
45449--45558	29	3.4	35	69	22	105	39	0	10	49	1.44
45470--45558	29	2.9	30	80	6	108	42	1	8	47	1.42
53327--53406	20	3.8	21	76	12	83	25	32	25	17	1.97
55539--55574	17	2.1	17	89	0	54	41	0	33	25	1.55
59134--59839	249	2.8	244	79	8	683	35	21	18	24	1.96
59134--59919	167	4.7	169	81	5	789	35	21	18	24	1.96
59180--59919	333	2.2	330	79	8	793	35	21	18	24	1.96

Tables:   1

The End!