genome.fa.s6904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006904.1 Hibiscus syriacus cultivar Beakdansim tig00017636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82325

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928--973	3	15.0	3	81	4	56	67	0	0	32	0.91
1081--1270	46	4.3	45	90	4	264	35	18	20	25	1.95
1080--1270	90	2.2	89	85	8	264	35	18	20	25	1.95
1206--1852	304	2.2	300	91	3	1072	35	21	19	23	1.96
1206--1852	75	8.6	76	93	2	1078	35	21	19	23	1.96
2513--2580	22	3.1	22	95	0	127	41	14	11	32	1.82
9243--9271	12	2.3	13	94	5	51	51	6	13	27	1.66
10887--10927	21	2.0	21	90	9	66	48	0	2	48	1.14
11480--11536	12	4.8	12	79	14	64	63	0	0	36	0.95
16519--16548	15	2.0	15	100	0	60	33	6	46	13	1.69
16921--17060	52	2.6	55	84	6	196	40	14	24	20	1.90
23389--23420	13	2.4	13	94	5	55	40	18	9	31	1.83
23642--23675	10	3.4	10	87	0	50	0	14	14	70	1.17
26626--26857	124	1.9	125	88	0	358	31	16	27	24	1.96
26639--27167	293	1.8	291	85	1	700	33	16	26	24	1.96
28473--28569	42	2.3	41	83	1	122	22	22	22	31	1.98
28687--28783	42	2.3	41	85	1	131	22	23	22	30	1.99
28898--29010	42	2.7	42	76	2	111	26	23	20	30	1.98
28351--29457	216	5.1	215	95	0	1867	32	15	20	32	1.93
28351--29457	431	2.6	429	93	0	1874	32	15	20	32	1.93
29349--29442	42	2.2	41	81	3	98	24	22	21	31	1.98
33159--33222	3	21.0	3	81	9	76	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33159--33212	21	2.5	21	93	3	90	64	0	0	35	0.94
37196--37424	59	3.9	60	80	5	227	31	22	3	41	1.72
39723--39893	93	1.8	93	84	2	236	46	7	5	40	1.55
43449--43514	30	2.1	32	81	10	75	56	9	4	30	1.51
52773--52829	22	2.6	22	100	0	114	14	35	33	17	1.90
52811--52944	28	4.7	28	81	2	160	19	36	28	15	1.92
52812--52951	57	2.5	57	92	0	235	20	37	27	15	1.92
53160--53205	15	2.7	17	72	21	51	60	0	39	0	0.97
53152--53197	20	2.3	21	82	14	62	65	0	34	0	0.93
53155--53201	19	2.5	19	83	10	60	63	0	36	0	0.94
53309--53352	21	2.1	21	86	0	61	29	0	18	52	1.46
53329--53391	28	2.2	30	94	5	112	30	0	12	57	1.36
57170--57211	11	3.8	11	84	12	59	28	2	0	69	1.01
57169--57211	16	2.6	17	75	20	54	30	2	0	67	1.03
57769--57802	16	2.1	16	88	0	50	47	2	8	41	1.50
57801--57825	13	1.9	13	100	0	50	48	4	0	48	1.20
57975--58015	15	2.7	15	88	0	64	34	0	7	58	1.26
58046--58092	22	2.2	22	85	11	62	36	2	6	55	1.37
58089--58160	14	5.5	14	71	23	50	48	1	8	41	1.42
58027--58166	38	3.8	35	73	17	115	42	2	7	47	1.44
58213--58268	16	3.2	16	74	16	58	37	5	10	46	1.62
58297--58336	17	2.5	15	88	8	53	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59440--59474	18	1.9	18	94	0	61	57	2	5	34	1.37
60753--60783	8	3.9	8	95	0	53	67	19	0	12	1.22
61112--61177	11	5.9	11	82	8	80	3	31	0	65	1.08
61329--61410	43	1.9	43	94	0	146	37	20	30	10	1.87
62269--62303	18	1.9	18	94	0	61	71	0	28	0	0.86
75714--75764	17	3.4	17	65	30	51	52	0	5	41	1.25
75729--75775	11	4.7	11	70	24	50	51	0	6	42	1.27
75714--75782	28	2.5	28	100	0	138	53	0	5	40	1.25
75923--75959	19	1.9	19	94	0	65	32	29	16	21	1.95
76004--76051	21	2.3	20	82	10	60	29	18	16	35	1.93
76087--76194	20	5.2	20	81	10	128	29	27	17	25	1.97
76066--76194	63	2.1	63	89	2	199	30	27	18	23	1.98
76357--76436	22	3.6	22	80	6	99	20	41	16	22	1.90
76816--76864	20	2.5	20	86	0	62	20	18	24	36	1.94
78200--78272	21	3.7	20	72	15	62	32	41	10	15	1.82
78887--78975	20	4.4	20	81	5	108	33	23	20	22	1.97
78884--79016	20	6.9	20	73	10	107	37	21	19	21	1.94
79046--79112	20	3.3	20	91	0	98	22	17	23	35	1.95
79099--79142	20	2.2	20	95	0	79	13	9	22	54	1.67
79647--79729	42	2.0	42	83	4	105	21	38	18	21	1.93
81225--81442	20	11.9	20	69	16	141	22	20	21	35	1.96
81191--81326	34	3.9	34	75	12	121	21	20	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81181--81327	73	2.0	74	86	1	206	22	20	20	36	1.95
81242--81439	54	3.7	54	91	0	308	21	20	21	36	1.95

Tables:   1

The End!