genome.fa.s6906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006906.1 Hibiscus syriacus cultivar Beakdansim tig00017644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100728

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4282--4349	17	3.2	22	71	28	58	20	4	8	66	1.37
4406--4695	42	6.9	42	73	15	206	25	18	6	49	1.71
4364--4726	44	8.6	44	71	12	115	26	19	6	47	1.73
7866--7918	27	1.9	28	84	3	72	30	3	3	62	1.30
7988--8085	33	2.9	33	75	15	92	44	2	0	53	1.12
8092--8223	26	4.7	26	69	23	79	54	0	4	40	1.21
8095--8218	29	4.2	29	74	15	119	55	0	4	39	1.21
8304--8365	29	2.1	29	88	5	90	69	1	1	27	1.07
10796--10838	15	2.9	15	82	0	59	44	25	6	23	1.78
10902--11341	236	1.9	236	99	0	871	46	20	7	26	1.76
11691--11749	22	2.7	22	97	0	109	33	22	15	28	1.94
11772--11809	20	1.9	20	88	0	58	47	2	15	34	1.60
11770--11815	20	2.3	20	76	0	56	47	2	17	32	1.60
15072--15171	6	16.7	6	78	4	58	30	9	10	51	1.66
15072--15171	24	4.2	24	80	2	85	30	9	10	51	1.66
15072--15171	12	8.3	12	76	4	76	30	9	10	51	1.66
16406--16483	27	2.8	28	90	1	131	48	7	8	34	1.63
16467--16521	19	2.9	19	100	0	110	49	9	14	27	1.73
19860--20344	226	2.1	225	90	1	756	30	16	14	38	1.88
20231--20446	118	1.8	118	87	0	324	32	20	11	35	1.89
23505--23635	65	2.0	65	94	2	228	22	22	17	38	1.93
26297--26484	104	1.8	103	88	3	288	29	15	15	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31726--31768	22	2.0	22	82	17	54	23	4	39	32	1.75
45119--45163	23	2.0	23	86	0	63	26	28	24	20	1.99
45142--45443	149	2.0	147	98	1	577	34	20	17	27	1.95
46311--46345	18	1.9	18	88	11	54	22	17	5	54	1.64
46928--46972	21	2.1	21	83	0	54	17	24	26	31	1.97
50170--50473	149	2.0	149	98	0	590	27	17	20	34	1.95
50456--50497	13	3.5	13	75	18	54	21	26	28	23	1.99
50452--50511	23	2.6	23	94	0	102	20	25	31	23	1.98
54312--54371	27	2.2	27	90	0	93	28	28	26	16	1.97
54322--54371	8	5.7	9	75	11	50	28	26	26	20	1.99
55418--55494	30	2.5	30	89	2	109	28	27	10	33	1.90
59695--59728	17	1.9	18	88	5	52	58	5	2	32	1.37
59838--59894	22	2.7	21	78	7	62	26	28	15	29	1.96
59814--59916	42	2.5	42	79	6	104	31	28	13	27	1.94
59937--59987	20	2.5	20	87	0	75	45	21	13	19	1.85
60154--60221	22	3.1	22	82	0	82	17	42	16	23	1.88
60180--60226	22	2.1	22	92	0	76	23	46	12	17	1.82
60568--60606	20	2.0	20	100	0	78	51	17	15	15	1.77
62142--62229	42	2.1	42	86	0	122	27	34	18	20	1.96
62617--62658	12	3.5	12	83	0	57	28	0	4	66	1.12
62761--62858	21	4.7	21	83	5	126	21	33	17	27	1.96
64436--64481	20	2.3	20	92	0	74	17	19	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64718--64753	18	2.0	18	94	0	63	16	2	25	55	1.55
66827--66854	3	9.3	3	100	0	56	0	35	0	64	0.94
67029--67082	24	2.2	24	93	0	90	40	20	18	20	1.91
67029--67096	24	2.8	24	84	0	64	38	20	17	23	1.93
67821--67854	16	2.1	16	88	0	50	64	0	5	29	1.17
68092--68149	20	2.9	20	77	10	57	37	12	25	24	1.90
68037--68149	40	2.8	40	78	2	111	34	13	23	28	1.93
68132--68211	20	4.0	20	79	12	74	31	12	22	33	1.91
68132--68199	21	3.3	21	82	12	77	32	10	23	33	1.88
68234--68275	20	2.1	20	90	0	66	30	9	30	28	1.89
68783--68838	23	2.4	23	90	0	85	39	14	3	42	1.63
69100--69201	30	3.3	29	79	14	89	26	8	9	54	1.62
69131--69201	30	2.3	30	85	9	90	25	8	8	57	1.56
69242--69415	29	5.7	29	68	21	88	24	7	11	56	1.60
72582--72655	30	2.5	30	84	8	98	35	47	13	4	1.62
72595--72645	15	3.4	15	73	10	50	33	47	13	5	1.67

Tables:   1

The End!