genome.fa.s6908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006908.1 Hibiscus syriacus cultivar Beakdansim tig00017651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118476

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6422--6674	89	2.8	89	80	12	284	47	5	12	33	1.66
11757--11822	30	2.2	30	97	0	123	39	15	12	33	1.84
15169--15236	34	2.0	34	88	5	102	19	10	7	63	1.49
28074--28147	20	3.7	20	88	0	103	36	18	20	24	1.95
28055--28167	40	2.8	40	72	10	122	31	22	20	25	1.98
28346--28409	22	2.9	22	88	0	92	25	40	15	18	1.90
28746--28815	20	3.5	20	88	1	106	11	15	22	50	1.76
30692--30743	20	2.6	20	84	0	77	42	23	17	17	1.89
30803--30874	20	3.6	20	92	0	117	20	20	22	36	1.96
31358--31462	21	5.0	21	74	3	95	20	37	19	22	1.95
31355--31465	42	2.6	42	78	5	118	20	37	18	22	1.94
32776--32811	14	2.6	14	90	0	54	30	0	22	47	1.52
32917--33012	33	2.8	33	90	3	138	43	20	22	12	1.86
33029--33122	33	2.8	33	85	3	116	17	23	17	42	1.88
33094--33163	20	3.5	20	86	0	95	18	24	21	35	1.95
35577--35628	24	2.2	24	82	0	59	36	17	19	26	1.94
36444--36510	20	3.3	20	91	0	107	23	19	25	31	1.98
36497--36590	20	4.7	20	85	2	134	21	21	19	38	1.94
36497--36590	41	2.3	40	88	1	134	21	21	19	38	1.94
36587--36627	21	2.0	21	90	0	64	39	17	24	19	1.92
36971--37077	50	2.1	50	82	3	126	16	37	26	19	1.93
40682--40768	35	2.5	34	80	12	97	55	10	8	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40987--41042	9	6.2	9	78	0	58	12	35	17	33	1.88
40984--41039	15	3.7	15	80	0	67	14	35	16	33	1.88
43255--43295	10	4.1	10	84	12	57	39	0	29	31	1.57
43416--43541	50	2.5	49	89	5	198	17	29	36	16	1.92
47635--47699	31	2.1	31	85	0	85	26	18	21	33	1.96
47685--47757	30	2.4	30	93	0	119	24	21	24	28	1.99
49544--49601	26	2.2	26	82	11	66	55	6	1	36	1.37
49654--49945	148	2.1	145	90	7	467	48	7	5	38	1.55
49923--49983	22	2.8	21	80	11	61	59	1	0	39	1.08
49885--49961	34	2.2	37	84	13	101	53	2	0	44	1.14
50595--50640	13	3.4	14	77	14	51	73	0	8	17	1.07
52374--52847	106	4.5	106	91	0	759	22	20	24	31	1.98
56084--56127	16	2.8	16	100	0	88	25	34	11	29	1.91
57059--57108	13	4.0	13	70	19	52	72	0	6	22	1.07
62808--62833	2	13.0	2	100	0	52	50	0	0	50	1.00
70194--70233	2	20.0	2	100	0	80	50	0	0	50	1.00
72280--72324	21	2.1	21	87	0	63	42	4	2	51	1.34
78707--78749	21	2.0	21	100	0	86	27	4	4	62	1.35
79313--79384	33	2.2	33	94	0	126	36	8	13	41	1.75
79727--79759	2	16.5	2	100	0	66	48	0	0	51	1.00
82072--82232	60	2.7	58	78	11	157	37	5	21	35	1.77
87228--87285	14	4.1	14	76	12	64	43	3	18	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87230--87284	29	1.9	28	92	3	92	45	3	18	32	1.67
87287--87326	14	2.9	14	88	0	53	30	15	17	37	1.90
87476--87527	27	1.9	27	85	14	72	46	0	0	53	1.00
87860--87973	20	5.7	20	79	6	95	33	25	16	24	1.96
87839--87972	61	2.2	61	77	6	137	34	24	18	22	1.96
88492--88558	19	3.5	19	85	2	89	47	25	16	10	1.78
88554--88699	19	8.1	19	71	17	114	12	21	20	45	1.84
88559--88691	52	2.5	53	87	4	180	12	21	21	45	1.84
88610--88674	33	1.9	33	87	3	94	12	21	23	43	1.86
90501--90533	17	1.9	17	88	11	50	24	18	12	45	1.83
90792--90880	42	2.1	42	82	0	115	22	38	15	23	1.93
92267--92303	14	2.6	14	88	12	58	29	0	21	48	1.50
92428--92465	14	2.7	14	100	0	76	42	23	26	7	1.81
92476--92606	19	7.7	19	66	23	94	14	22	19	42	1.88
92480--92606	33	3.9	32	87	8	193	14	22	19	42	1.88
92473--92605	66	2.0	66	97	0	248	16	22	19	41	1.90
94898--94933	12	3.0	12	95	0	63	2	22	0	75	0.94
95106--95159	24	2.2	24	90	0	81	40	20	16	22	1.91
95944--95995	21	2.5	21	87	3	70	38	17	23	21	1.93
95980--96071	20	4.6	20	73	2	76	39	21	18	20	1.93
96288--96372	20	4.2	20	73	5	91	37	23	22	16	1.93
96576--96612	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98056--98115	21	2.9	20	73	11	59	20	13	45	21	1.85
98482--98582	20	5.5	19	75	14	77	41	21	21	14	1.89
98538--98594	14	3.7	14	75	20	60	50	22	15	10	1.74
98522--98633	33	3.4	33	93	1	181	47	20	17	14	1.82
98522--98644	65	1.9	66	86	5	178	47	21	17	13	1.82
98640--98736	19	5.6	19	65	26	72	13	21	20	44	1.86
98645--98736	33	2.8	33	89	0	148	13	20	20	45	1.84
98721--98775	20	2.8	19	83	8	65	16	23	23	36	1.94
100621--100679	20	3.0	20	87	0	73	42	22	18	16	1.89
100923--100966	22	2.0	22	95	0	79	18	15	45	20	1.85
101134--101268	20	6.7	20	79	7	112	24	17	24	34	1.96
101137--101271	61	2.2	61	84	4	182	23	16	24	35	1.95
101154--101289	61	2.2	61	80	5	150	22	19	24	33	1.97
101765--101831	21	3.3	20	70	23	52	50	0	1	47	1.10
108143--108176	2	17.0	2	100	0	68	50	0	0	50	1.00
108851--108884	17	1.9	18	88	5	52	47	0	5	47	1.26
109371--109414	12	3.7	12	81	0	52	59	22	11	6	1.55

Tables:   1

The End!