genome.fa.s6909.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006909.1 Hibiscus syriacus cultivar Beakdansim tig00017674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91657

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426--478	21	2.5	21	77	17	56	20	26	18	33	1.96
485--582	21	4.7	21	85	0	142	41	13	21	23	1.88
485--582	42	2.3	42	92	3	162	41	13	21	23	1.88
571--685	20	5.7	20	81	6	124	32	28	17	21	1.96
569--705	41	3.4	40	82	6	168	34	27	16	21	1.95
1172--1228	20	2.8	20	86	0	69	15	17	21	45	1.85
1364--1418	25	2.2	24	78	15	58	20	9	18	52	1.71
2539--2586	18	2.7	18	90	0	78	29	45	12	12	1.78
2950--2999	18	2.8	18	100	0	100	32	20	6	42	1.76
3136--3181	20	2.3	20	84	0	56	36	23	21	17	1.94
3147--3191	20	2.3	20	88	3	74	37	17	24	20	1.93
3155--3271	19	6.6	19	73	19	101	43	21	21	13	1.87
3191--3249	14	3.9	14	76	20	64	49	23	16	10	1.77
3175--3266	33	2.8	33	98	0	175	47	21	18	11	1.80
3278--3402	20	6.7	19	79	13	89	14	22	21	41	1.89
3330--3402	20	3.7	20	88	0	110	16	24	23	35	1.95
3350--3428	20	4.0	19	79	8	68	21	18	25	34	1.96
3777--3845	21	3.3	20	74	6	66	24	40	15	18	1.90
3767--3857	41	2.2	42	88	2	139	21	41	15	20	1.89
5425--5470	19	2.4	19	96	0	83	50	17	17	15	1.79
5639--5708	20	3.5	20	75	11	70	21	18	27	32	1.97
5738--5790	21	2.5	22	75	6	56	33	16	24	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7436--7562	60	2.1	60	81	5	141	35	22	5	36	1.78
21881--21907	8	3.4	8	100	0	54	37	0	11	51	1.37
26269--26472	101	2.0	102	99	0	401	33	14	17	34	1.91
26523--27145	51	11.9	52	76	9	437	34	18	24	22	1.96
26641--27040	158	2.6	154	78	8	427	33	19	24	22	1.97
26522--27145	209	3.0	209	92	2	977	34	18	24	22	1.96
26630--27159	260	2.0	263	84	3	694	33	18	24	23	1.97
31047--31124	39	2.0	40	89	2	122	15	12	33	38	1.85
33156--33204	22	2.2	22	89	7	73	48	2	6	42	1.39
36426--36467	21	2.0	21	85	0	57	33	14	28	23	1.94
40468--40525	3	19.3	3	82	7	73	29	1	1	67	1.11
40482--40536	18	2.9	19	84	7	51	29	1	0	69	0.99
40467--40536	21	3.2	22	82	6	54	30	2	1	65	1.15
40560--40591	11	2.9	11	100	0	64	37	43	18	0	1.51
47080--47202	23	5.2	22	73	11	84	73	9	13	3	1.21
47080--47197	12	10.2	11	69	19	62	72	9	14	3	1.22
47104--47142	21	2.0	21	90	10	64	71	7	20	0	1.10
48788--48930	36	4.0	35	81	8	173	30	19	12	37	1.89
48791--48925	71	1.9	72	87	4	202	31	20	13	34	1.91
48892--49140	106	2.4	103	82	8	299	29	20	11	38	1.87
49084--49203	36	3.4	36	80	6	122	30	21	12	35	1.91
49455--49531	29	2.7	29	86	8	104	29	7	16	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49483--49546	28	2.3	27	86	5	83	31	6	12	50	1.65
49542--49645	52	2.0	53	94	3	183	32	13	17	36	1.89
49615--49673	28	2.2	28	81	6	68	35	6	16	40	1.76
49629--49695	28	2.4	28	90	7	100	37	7	13	41	1.73
49651--49787	63	2.2	63	86	5	188	31	13	11	43	1.81
49842--49917	31	2.5	31	83	12	86	28	15	11	43	1.83
50022--50140	63	1.9	64	84	10	165	28	16	11	42	1.84
50219--50681	46	10.7	45	72	14	264	25	31	18	24	1.97
50273--50645	41	8.8	40	72	14	221	25	32	18	23	1.97
50234--50515	41	6.5	44	73	10	179	25	32	19	23	1.98
50227--50681	130	3.5	130	93	1	751	25	32	18	23	1.97
50533--50649	40	2.9	39	80	12	105	24	35	15	24	1.94
50843--50900	3	19.3	3	82	7	73	29	1	1	67	1.11
50936--50967	11	2.9	11	100	0	64	37	43	18	0	1.51
57134--57158	6	4.2	6	100	0	50	48	52	0	0	1.00
58436--58470	2	17.5	2	100	0	70	51	0	0	48	1.00
60298--60355	14	4.1	13	79	18	62	63	0	1	34	1.04
61132--61270	30	4.5	30	92	3	206	45	2	0	51	1.16
64166--64203	16	2.3	17	86	4	51	42	2	5	50	1.39
64663--64738	2	40.5	2	75	12	63	47	1	1	50	1.18
76153--76179	10	2.7	10	100	0	54	40	14	33	11	1.82
80678--80800	21	5.8	21	77	9	108	23	29	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80681--80844	21	7.6	22	71	13	87	22	29	15	32	1.94
80681--80843	65	2.6	65	92	4	262	22	29	15	32	1.95
81319--81361	13	3.3	13	87	6	61	34	11	9	44	1.73
83080--83113	13	2.6	14	86	13	54	44	8	5	41	1.60

Tables:   1

The End!