Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000691.1 Hibiscus syriacus cultivar Beakdansim tig00001347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134756

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
382--479
21
4.6
22
77
13
82
34
1
2
62
1.14
1534--1569
14
2.6
14
91
8
56
27
0
2
69
1.02
4334--4422
8
11.1
8
80
0
79
33
2
28
35
1.70
5578--5710
53
2.4
53
81
7
140
34
8
0
56
1.35
5734--5810
30
2.6
30
83
4
84
42
6
1
49
1.36
5818--5888
31
2.3
31
88
7
101
33
5
1
59
1.30
5887--5935
19
2.7
18
81
6
64
42
0
0
57
0.99
5953--6069
27
4.1
29
76
12
107
53
0
6
38
1.33
5994--6069
29
2.6
30
87
8
104
51
0
3
44
1.20
6750--6789
11
3.6
11
80
12
55
62
0
0
37
0.95
8608--8647
13
3.0
13
81
3
53
67
0
0
32
0.91
8608--8640
16
2.1
15
94
5
57
72
0
0
27
0.85
13789--13836
19
2.5
20
83
12
57
52
4
12
31
1.58
16656--16680
2
12.5
2
100
0
50
52
0
0
48
1.00
17041--17078
2
19.0
2
100
0
76
50
0
0
50
1.00
18949--18994
23
2.0
23
100
0
92
21
17
26
34
1.95
20056--20098
22
2.0
22
85
0
59
4
9
2
83
0.87
20072--20150
8
9.2
8
71
17
52
7
13
0
78
0.95
20064--20136
16
4.4
17
70
24
50
5
16
0
78
0.94
20086--20135
19
2.7
20
85
14
72
4
18
0
78
0.91
28766--28793
2
14.0
2
100
0
56
50
0
0
50
1.00
28802--28839
17
2.2
18
86
9
53
68
5
0
26
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29159--29216
2
29.0
2
100
0
116
50
0
0
50
1.00
32171--32213
22
2.0
22
85
0
59
4
9
2
83
0.87
32187--32265
8
9.2
8
71
17
52
7
13
0
78
0.95
32179--32251
16
4.4
17
70
24
50
5
16
0
78
0.94
32201--32250
19
2.7
20
85
14
72
4
18
0
78
0.91
41562--41593
14
2.3
14
94
0
55
62
6
15
15
1.51
43748--43779
3
10.7
3
100
0
64
34
0
0
65
0.93
55074--55111
17
2.2
17
86
9
51
28
5
0
65
1.14
61289--61341
22
2.5
22
85
11
58
39
16
16
26
1.91
70108--70526
54
7.8
54
87
1
561
31
20
19
27
1.97
76919--77369
54
8.4
54
89
0
652
31
20
19
27
1.97
89990--90029
2
20.0
2
100
0
80
50
0
0
50
1.00
90162--90200
16
2.4
17
86
4
53
28
46
7
17
1.76
90575--90602
4
7.0
4
100
0
56
0
25
0
75
0.81
91353--91434
29
2.8
29
94
1
137
32
14
9
42
1.79
96103--96184
29
2.8
29
94
1
137
32
14
9
42
1.79
105564--105639
36
2.1
36
97
0
143
31
10
14
43
1.79
106060--106089
15
2.0
15
100
0
60
13
26
46
13
1.80
110561--110636
36
2.1
36
97
0
143
31
10
14
43
1.79
111489--111525
18
2.1
18
100
0
74
51
0
21
27
1.48
119721--119789
3
22.7
3
94
2
120
63
0
1
34
1.03
120009--121014
113
8.9
113
96
0
1708
28
19
14
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121741--122550
83
9.8
83
98
1
1538
37
22
11
27
1.89
123683--123735
15
3.8
13
79
16
61
1
16
0
81
0.79
123683--123746
21
2.9
22
73
19
53
3
17
0
79
0.85
134201--134238
15
2.8
13
88
11
51
68
2
5
23
1.23
134313--134337
7
3.6
7
100
0
50
32
0
0
68
0.90

Tables:   1

The End!