genome.fa.s6911.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006911.1 Hibiscus syriacus cultivar Beakdansim tig00017699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85468

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3221--3252	15	2.1	15	94	0	55	12	15	6	65	1.44
6327--6554	121	1.9	121	81	1	278	36	20	14	28	1.91
23106--23154	23	2.1	23	84	0	62	14	24	12	48	1.77
28173--28204	3	10.7	3	93	0	55	28	3	0	68	1.04
29866--29899	15	2.2	16	89	5	52	8	50	2	38	1.49
30949--30991	4	10.8	4	90	9	54	27	0	0	72	0.85
36900--37259	94	3.7	94	87	8	540	34	25	18	22	1.96
36971--37123	43	3.4	43	66	13	108	35	25	18	19	1.95
36900--37259	200	1.9	188	90	6	576	34	25	18	22	1.96
37057--37302	106	2.3	106	95	0	438	33	25	18	23	1.97
40858--40910	22	2.2	24	78	18	58	47	3	11	37	1.58
41375--41411	2	19.0	2	94	5	67	48	0	0	51	1.00
51430--52032	303	2.0	300	90	2	949	33	18	18	29	1.95
52557--52582	13	2.0	13	100	0	52	23	7	0	69	1.14
57136--57185	24	2.1	24	85	7	66	60	14	2	24	1.45
61891--61934	16	2.8	16	89	3	63	36	2	13	47	1.56
63917--64528	300	2.0	306	94	3	1085	41	20	16	21	1.90
68714--68752	21	1.9	19	85	10	51	41	5	12	41	1.65
70033--70135	54	1.9	54	83	0	134	35	9	3	50	1.54
71561--71611	20	2.5	21	75	6	52	45	0	1	52	1.12
71601--71694	25	3.8	25	67	14	61	40	1	2	56	1.18
71963--71992	15	2.1	14	93	6	51	60	3	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77264--77437	90	1.9	90	88	2	260	31	16	8	44	1.77

Tables:   1

The End!