genome.fa.s6912.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006912.1 Hibiscus syriacus cultivar Beakdansim tig00017701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78107

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2467--2540	14	5.5	13	80	6	85	44	0	4	51	1.20
2477--2540	14	4.8	13	86	7	92	48	0	3	48	1.17
2467--2540	27	2.7	27	95	4	132	44	0	4	51	1.20
3724--3765	16	2.6	16	96	0	75	21	16	47	14	1.82
4138--4188	24	2.2	24	82	3	59	43	3	1	50	1.31
5345--5413	32	2.1	32	84	7	86	34	7	33	24	1.83
6824--6876	26	2.0	26	100	0	106	50	18	3	26	1.64
8403--8468	33	2.0	32	97	2	123	39	24	12	24	1.89
10466--10491	2	13.0	2	100	0	52	50	0	0	50	1.00
11906--11970	34	1.9	34	100	0	130	43	9	16	30	1.80
12454--12506	21	2.5	21	84	0	70	20	26	18	33	1.96
12496--12583	20	4.4	20	86	2	124	37	23	19	19	1.94
13443--13496	24	2.2	24	90	0	81	22	18	20	38	1.93
15928--15993	20	3.3	20	83	8	89	33	24	22	19	1.97
15937--15996	20	3.0	20	92	0	102	33	23	25	18	1.97
16005--16041	19	1.9	19	100	0	74	48	10	21	18	1.78
16130--16196	20	3.4	20	79	6	75	40	23	19	16	1.91
16252--16337	20	4.3	20	94	2	138	34	19	19	25	1.96
16338--16428	33	2.7	34	86	3	121	14	23	19	42	1.88
16532--16566	14	2.5	14	85	0	52	48	20	0	31	1.50
17916--18027	42	2.7	42	76	8	113	25	17	35	21	1.95
18515--18633	20	5.9	20	94	0	184	38	20	18	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18668--18749	19	4.3	18	81	7	83	13	17	21	47	1.81
18874--19246	94	4.0	94	91	1	568	49	17	11	21	1.78
20987--21027	20	2.0	20	90	0	64	12	12	17	58	1.63
21566--21631	34	1.9	34	84	0	87	18	18	25	37	1.93
21562--21667	20	5.6	20	72	15	98	17	19	27	34	1.95
21729--21844	21	5.7	20	67	16	67	25	19	21	32	1.97
24742--24833	43	2.2	42	86	7	127	48	8	6	35	1.60
24942--25025	40	2.1	40	93	0	141	55	7	5	30	1.51
43750--43793	21	2.1	21	100	0	88	34	13	20	31	1.92
50336--50410	36	2.1	36	85	9	100	48	1	4	46	1.29
56269--56346	38	2.0	39	85	7	106	56	6	12	24	1.60
57769--57801	12	2.8	12	90	4	50	54	0	0	45	0.99
59525--59596	31	2.4	31	76	9	76	44	5	15	34	1.70
65938--66008	19	3.7	19	84	1	79	30	14	25	29	1.94
66511--66562	17	3.1	17	78	8	52	71	0	23	5	1.07
66501--66560	21	2.6	24	82	12	81	71	0	21	6	1.08
68905--68965	7	8.7	7	77	13	56	47	27	0	24	1.52
68899--68965	14	4.8	13	79	17	64	47	26	0	25	1.52
68893--68959	21	3.2	20	81	8	71	47	28	0	23	1.52
71326--71355	14	2.1	14	93	0	51	16	46	16	20	1.84
75392--75435	21	2.2	20	87	4	61	61	0	0	38	0.96
77131--77157	14	1.9	14	100	0	54	33	7	0	59	1.25

Tables:   1

The End!