Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006913.1 Hibiscus syriacus cultivar Beakdansim tig00017711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61127

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2184--2211
2
14.0
2
100
0
56
50
0
0
50
1.00
2804--2850
18
2.6
17
81
18
51
55
0
2
42
1.12
3628--3661
8
4.1
8
88
7
50
47
0
0
52
1.00
3895--3922
2
14.0
2
100
0
56
0
50
0
50
1.00
6932--7075
50
2.8
51
86
5
211
45
15
13
25
1.82
7158--7303
65
2.2
65
81
12
167
54
1
4
39
1.30
16934--17464
276
1.9
275
89
1
823
35
17
11
35
1.86
17451--17568
46
2.6
45
79
5
121
30
15
11
42
1.83
18952--18989
19
2.0
19
85
10
51
36
10
0
52
1.36
20973--21050
23
3.4
23
87
7
113
57
12
11
17
1.64
26586--26615
14
2.1
14
93
0
51
50
6
0
43
1.28
26693--26736
7
6.3
7
86
0
52
22
0
31
45
1.53
29471--29574
11
9.5
11
83
0
136
26
18
27
26
1.98
29470--29582
22
5.1
22
95
2
183
25
18
28
27
1.98
36831--37200
43
8.6
42
80
8
327
22
19
25
31
1.98
36847--37200
128
2.8
128
80
8
373
23
19
25
31
1.98
37610--37676
21
3.2
20
78
4
62
2
32
19
44
1.66
44927--44951
12
2.1
12
100
0
50
28
24
16
32
1.96
46929--46975
3
15.0
3
86
8
67
63
0
0
36
0.94
47190--47416
124
1.8
123
88
0
346
25
17
14
43
1.86
47332--47982
116
5.7
113
89
2
887
28
19
14
37
1.91
47332--47982
229
2.9
225
86
5
923
28
19
14
37
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48310--48507
95
2.1
95
99
0
387
32
15
14
37
1.88
48924--49311
83
4.7
83
97
0
713
39
22
12
26
1.89
48835--49311
166
2.8
166
92
3
749
38
22
12
25
1.89
48835--49311
249
1.9
254
90
4
768
38
22
12
25
1.89
50539--50576
7
5.4
7
84
9
51
0
18
0
81
0.69
57897--57928
15
2.1
15
94
0
55
46
9
18
25
1.79
60640--60664
9
2.8
9
100
0
50
52
0
0
48
1.00

Tables:   1

The End!