genome.fa.s6915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006915.1 Hibiscus syriacus cultivar Beakdansim tig00017721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143066

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8735--8761	13	2.1	13	100	0	54	22	44	11	22	1.84
9197--9255	29	2.0	30	93	3	102	55	8	0	35	1.30
9198--9268	29	2.4	29	85	2	97	52	9	2	35	1.49
23031--23083	26	2.0	26	85	7	72	54	22	7	15	1.65
27306--27361	24	2.2	25	84	12	71	69	1	1	26	1.08
29026--29223	94	2.1	95	95	2	355	47	12	4	35	1.59
31353--31418	10	6.8	10	76	11	66	16	22	31	28	1.96
31353--31420	19	3.5	19	91	2	100	16	25	30	27	1.96
31437--31490	17	3.2	17	97	0	99	18	44	22	14	1.86
31431--31483	17	2.6	22	69	27	62	20	47	20	11	1.81
38680--38748	10	7.1	10	76	12	72	18	23	30	27	1.98
38680--38750	19	3.7	19	92	1	106	18	25	29	26	1.98
38746--38773	14	2.0	14	100	0	56	21	50	21	7	1.72
38747--38795	22	2.4	20	90	10	73	20	48	22	8	1.75
38744--38820	17	4.4	17	83	6	100	18	42	23	15	1.88
38809--38833	7	3.6	7	100	0	50	16	28	28	28	1.97
54463--54519	20	2.6	21	83	13	71	26	8	10	54	1.63
61018--61174	30	5.2	30	92	0	242	31	22	20	24	1.98
67544--67578	2	17.0	2	94	5	61	48	2	0	48	1.16
68680--68709	15	2.0	15	100	0	60	13	26	46	13	1.80
74252--74291	20	2.0	20	100	0	80	30	30	5	35	1.79
76584--76608	11	2.3	11	100	0	50	28	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78089--78127	20	2.0	20	100	0	78	30	28	5	35	1.79
81473--81508	19	2.0	17	89	10	54	47	0	0	52	1.00
82926--82953	3	9.3	3	100	0	56	64	0	0	35	0.94
83480--83811	112	3.0	112	88	1	490	25	18	16	39	1.91
84967--85001	18	1.9	18	94	0	61	57	5	2	34	1.37
85363--85416	14	3.5	15	80	17	58	5	16	0	77	0.94
92693--92724	15	2.1	15	94	0	55	46	9	18	25	1.79
95446--95655	109	1.9	110	80	13	245	44	9	9	36	1.69
95648--95718	29	2.7	26	72	21	65	56	0	2	40	1.14
95759--95794	19	2.0	17	89	10	54	47	0	0	52	1.00
96967--96999	15	2.2	15	94	0	57	15	21	48	15	1.81
97205--97229	3	8.3	3	100	0	50	64	0	0	36	0.94
103982--104091	34	3.3	34	87	7	154	44	18	5	31	1.72
107168--107876	65	10.9	65	88	0	1006	31	13	21	33	1.92
108002--108094	17	5.5	17	75	5	71	62	10	12	13	1.55
108007--108121	34	3.4	33	74	10	97	60	8	16	13	1.57
108095--108180	34	2.5	34	80	10	104	52	4	23	19	1.65
115696--115736	8	5.2	8	82	5	57	34	0	29	36	1.58
115807--116561	128	5.9	128	98	0	1460	22	25	19	32	1.98
116959--117058	33	3.0	34	83	2	130	40	2	4	54	1.31
116978--117055	39	2.0	39	80	12	88	37	0	3	58	1.16
117581--117671	21	4.3	20	88	4	110	18	26	35	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119444--119518	33	2.3	31	86	6	96	61	1	0	37	1.05
119464--119499	18	1.9	19	88	5	56	61	2	0	36	1.11
119501--119548	15	3.0	15	77	16	51	62	6	0	31	1.20
119444--119548	33	3.2	33	81	10	83	60	3	0	35	1.15
120426--120482	14	4.4	14	72	17	50	8	10	24	56	1.61
120427--120501	24	3.1	24	86	3	89	12	9	21	57	1.62
121224--121298	10	7.7	10	67	21	52	8	12	21	58	1.59
121230--121294	16	4.1	16	93	0	112	6	12	23	58	1.56
121363--121394	16	2.0	16	93	0	55	6	9	18	65	1.42
123712--123744	14	2.3	15	89	5	50	42	6	0	51	1.26
125504--125891	182	2.1	182	90	0	607	42	12	15	28	1.84
127804--128323	198	2.6	195	79	5	528	39	13	15	31	1.86
128318--128479	86	1.9	87	90	1	263	30	13	12	43	1.82
128393--128439	23	2.0	23	95	0	85	31	19	8	40	1.81
128400--128451	23	2.3	23	89	0	77	34	13	9	42	1.77
128502--128537	16	2.2	16	90	5	54	30	19	5	44	1.73
131169--131219	19	2.7	19	85	8	61	54	3	1	39	1.30

Tables:   1

The End!