Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006916.1 Hibiscus syriacus cultivar Beakdansim tig00017723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68143

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
252--304
7
7.3
7
81
14
54
83
0
16
0
0.66
259--305
10
4.8
10
92
5
78
85
0
14
0
0.61
257--306
19
2.6
19
87
3
73
84
0
16
0
0.63
1427--2014
82
7.2
83
85
9
830
29
12
21
37
1.89
1846--2272
195
2.2
187
92
5
705
29
12
21
36
1.90
1928--2469
299
1.8
297
92
4
921
31
13
20
34
1.91
2828--2932
52
2.0
52
94
3
185
36
13
18
32
1.89
3219--4440
113
11.0
113
92
3
1826
34
15
18
31
1.92
4368--4423
20
3.0
20
70
15
57
50
8
23
17
1.74
4667--4730
3
21.0
3
81
9
76
40
0
0
59
0.97
4664--4727
15
4.3
15
88
11
96
40
0
0
59
0.97
9960--10009
23
2.2
23
81
0
55
26
20
22
32
1.98
9967--10012
23
2.0
23
91
0
74
21
21
26
30
1.99
15149--15180
16
2.0
16
93
0
55
46
6
21
25
1.74
17834--18311
242
2.0
242
98
0
929
34
24
16
24
1.95
24773--24823
15
3.3
15
75
21
52
33
19
1
45
1.62
27566--27672
50
2.1
50
81
6
128
20
18
22
38
1.94
27796--27891
3
31.7
3
93
6
167
32
0
2
65
1.04
28447--28501
2
28.0
2
96
3
103
49
0
0
50
1.00
29568--29668
2
52.0
2
74
13
77
45
3
1
48
1.32
31149--31336
31
6.0
31
89
2
279
20
18
21
39
1.93
31149--31336
94
2.0
93
89
3
288
20
18
21
39
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34596--34636
21
2.0
21
85
0
55
29
29
24
17
1.97
35312--35498
31
6.0
31
94
1
313
20
18
22
38
1.93
47847--47898
27
2.0
27
84
3
70
73
0
21
5
1.04
49121--49439
111
2.9
111
88
2
444
32
24
16
26
1.96
49564--49607
3
14.7
3
100
0
88
31
0
0
68
0.90
50171--50196
2
13.0
2
100
0
52
50
0
0
50
1.00
51104--51367
2
137.5
2
72
13
180
44
3
4
48
1.37
53206--53237
13
2.5
13
95
5
57
68
18
12
0
1.20
61008--61065
20
2.7
20
86
10
71
24
22
24
29
1.99

Tables:   1

The End!