genome.fa.s6917.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006917.1 Hibiscus syriacus cultivar Beakdansim tig00017725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182325

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8281--8314	2	17.0	2	100	0	68	50	0	50	0	1.00
10953--10984	2	16.0	2	100	0	64	0	50	0	50	1.00
20207--20259	26	2.0	26	100	0	106	49	15	3	32	1.62
22642--22685	21	2.0	23	86	8	65	47	0	4	47	1.22
23874--23917	19	2.2	20	84	4	54	56	0	0	43	0.99
23942--23970	13	2.1	14	93	6	51	51	0	0	48	1.00
24217--24270	21	2.7	20	82	2	63	48	0	3	48	1.19
29071--29135	26	2.6	25	75	4	69	50	20	1	27	1.57
34194--34223	15	2.0	15	100	0	60	33	33	13	20	1.91
35182--35210	14	2.1	14	100	0	58	37	0	6	55	1.27
35384--35427	21	2.0	23	86	8	65	47	0	4	47	1.22
37933--37957	13	1.9	13	100	0	50	48	4	0	48	1.20
38233--38276	19	2.2	20	84	4	54	56	0	0	43	0.99
38256--38319	26	2.5	26	73	19	62	51	1	1	45	1.20
38301--38329	13	2.1	14	93	6	51	51	0	0	48	1.00
37875--38583	369	1.9	367	83	6	907	44	8	9	37	1.68
38684--38711	13	2.2	13	100	0	56	42	7	14	35	1.73
38696--38758	27	2.3	27	100	0	126	42	14	7	34	1.75
44041--44095	26	2.1	25	89	0	74	50	20	1	27	1.58
44130--44180	26	2.0	26	96	0	93	50	15	5	27	1.67
44203--44290	36	2.5	34	75	10	88	42	1	3	53	1.25
44776--44817	21	2.0	20	86	4	57	42	0	2	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45078--45270	88	2.2	88	96	1	354	50	3	3	41	1.37
49747--49844	21	4.5	22	68	22	66	52	1	4	42	1.27
49835--49859	13	1.9	13	100	0	50	48	4	0	48	1.20
50139--50182	19	2.2	20	84	4	54	56	0	0	43	0.99
50094--50223	60	2.3	55	76	15	131	53	0	1	44	1.15
49777--50474	363	1.9	369	83	6	918	44	9	9	36	1.69
54569--54605	15	2.3	17	81	13	51	64	5	2	27	1.28
56658--56712	26	2.1	26	82	0	65	49	18	3	29	1.64
57209--57250	21	2.0	20	86	4	57	42	0	2	54	1.13
57512--57705	88	2.2	88	94	2	338	51	3	3	41	1.37
57723--57756	16	2.1	16	88	5	50	50	0	0	50	1.00
65836--65933	21	4.5	22	68	22	66	52	1	4	42	1.27
65924--65948	13	1.9	13	100	0	50	48	4	0	48	1.20
66227--66270	19	2.2	20	84	4	54	56	0	0	43	0.99
65866--66564	363	1.9	370	82	7	888	44	8	10	36	1.69
72722--72776	26	2.1	26	82	0	65	49	18	3	29	1.64
73271--73312	21	2.0	20	86	4	57	42	0	2	54	1.13
73574--73767	88	2.2	88	94	1	347	51	3	3	41	1.37
73784--73817	16	2.1	16	88	5	50	50	0	0	50	1.00
78360--78465	52	2.0	53	85	8	146	53	0	1	43	1.18
78382--78472	19	4.9	19	69	27	63	52	1	2	43	1.20
78359--78620	130	2.0	129	89	7	410	50	1	4	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82877--82913	15	2.3	17	81	13	51	64	5	2	27	1.28
84878--84932	26	2.1	26	86	0	74	50	18	1	29	1.57
84967--85017	26	2.0	26	96	0	93	50	15	5	27	1.67
85617--85658	21	2.0	20	86	4	57	42	0	2	54	1.13
87222--87255	17	2.0	17	88	0	50	50	8	8	32	1.64
88168--88265	49	2.0	49	95	0	178	37	19	15	27	1.92
91402--91643	128	1.9	129	87	3	362	45	13	19	21	1.85
111193--111231	19	2.1	19	95	0	69	20	25	28	25	1.99
111254--111304	7	7.4	7	91	4	86	15	27	29	27	1.96
111254--111300	20	2.3	20	92	3	76	14	27	29	27	1.96
114102--114187	23	3.7	23	77	13	95	26	26	26	19	1.99
134836--135075	128	1.9	128	89	1	374	21	19	13	45	1.85
141386--141502	45	2.6	45	86	0	171	36	21	11	29	1.89
144654--144725	36	2.0	36	100	0	144	33	13	11	41	1.80
154128--154575	228	2.0	227	94	2	783	45	7	7	39	1.62
154641--154686	20	2.3	19	89	10	74	54	10	17	17	1.70
154807--154853	20	2.4	19	82	10	67	53	10	17	19	1.72
154816--154858	20	2.3	19	88	11	63	51	11	16	20	1.75
156878--156940	26	2.4	26	76	10	65	23	3	14	58	1.50
157403--158460	184	5.8	184	97	0	1994	35	14	16	33	1.89
161037--161100	23	2.8	23	87	0	92	35	6	20	37	1.78
161037--161109	23	3.2	23	82	7	85	34	5	20	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161462--161525	23	2.8	23	87	0	92	35	6	20	37	1.78
161462--161534	23	3.2	23	82	7	85	34	5	20	39	1.76
160939--161766	426	1.9	424	96	1	1543	40	8	12	39	1.73
161798--161848	25	2.0	25	92	0	84	33	7	19	39	1.81
162097--162133	18	2.1	18	89	0	56	32	5	10	51	1.60
162089--162135	24	2.0	24	86	0	67	34	4	14	46	1.64
162390--162476	39	2.2	39	95	0	156	48	20	13	17	1.81
165675--165719	21	2.1	22	87	4	65	46	24	15	13	1.82
181267--181347	12	7.0	11	72	21	51	61	0	3	34	1.14
181356--181402	17	2.8	17	81	9	60	76	0	2	21	0.89

Tables:   1

The End!