Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006920.1 Hibiscus syriacus cultivar Beakdansim tig00017743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85889
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:625 original size:30 final size:29
Alignment explanation
Indices: 589--645 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
579 TTTTATTAAC
*
589 ATATGAATGTGTTCCATGTGAAAGTGTTTT
1 ATATGAATGTGTTCCACGTGAAA-TGTTTT
*
619 ATATGAATGTGTTCTACGTGAAATGTT
1 ATATGAATGTGTTCCACGTGAAATGTT
646 ATACGTGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (29 bp):
ATATGAATGTGTTCCACGTGAAATGTTTT
Found at i:640 original size:15 final size:15
Alignment explanation
Indices: 592--640 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
582 TATTAACATA
*
592 TGAATGTGTTCCATG
1 TGAATGTGTTCTATG
* * *
607 TGAAAGTGTTTTATA
1 TGAATGTGTTCTATG
*
622 TGAATGTGTTCTACG
1 TGAATGTGTTCTATG
637 TGAA
1 TGAA
641 ATGTTATACG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (15 bp):
TGAATGTGTTCTATG
Found at i:5917 original size:42 final size:42
Alignment explanation
Indices: 5871--5992 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 42
5861 ATTACGGCGC
* *
5871 TTGTAAAAAAATGTCGCTACATATCCTAACATATTGCGACGT
1 TTGTAAAAAAACGTCGCTAAATATCCTAACATATTGCGACGT
** * * **
5913 TTGTACCCAAAACGTCGTTAAATGTCCTAACATATTGCGTTGT
1 TTGTA-AAAAAACGTCGCTAAATATCCTAACATATTGCGACGT
** *
5956 TTGTGTAAAAACG-CTGCTAAATATCCTAACCTATTGC
1 TTGTAAAAAAACGTC-GCTAAATATCCTAACATATTGC
5993 AGCGCTTTTT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.02
42 30 0.47
43 33 0.52
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
TTGTAAAAAAACGTCGCTAAATATCCTAACATATTGCGACGT
Found at i:7018 original size:2 final size:2
Alignment explanation
Indices: 7011--7035 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7001 AACAAGAAAA
7011 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
7036 AAATTCTCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7633 original size:3 final size:3
Alignment explanation
Indices: 7625--7652 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7615 TGTCACATAC
7625 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7653 AATAATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8236 original size:175 final size:175
Alignment explanation
Indices: 7942--8292 Score: 612
Period size: 175 Copynumber: 2.0 Consensus size: 175
7932 CACTCCGCTG
* *
7942 CTATGTTCTCTAATGATTCGTTGCCACAACACCAAAGCCTCTAGAAGATGCTCGGCCAGCCAAAC
1 CTATGTTCTCCAATGATTCGCTGCCACAACACCAAAGCCTCTAGAAGATGCTCGGCCAGCCAAAC
*
8007 ACGTCGTTGCCCTATGGTGAGTCACCACCATAGCTTCGGTGACTTACCGAGGGCCACTTTTGTGA
66 ACGTCGTTACCCTATGGTGAGTCACCACCATAGCTTCGGTGACTTACCGAGGGCCACTTTTGTGA
*
8072 CCGGTTTGAGAGCAACATCGATGAGGCCTATAAAAAGGCCATCCA
131 CCAGTTTGAGAGCAACATCGATGAGGCCTATAAAAAGGCCATCCA
* * **
8117 CTATGTTCTCCAATGATTTGCTGCCACAACACCGAAGCCTCTAGAAGATGCTCGGCCAGCCGCAC
1 CTATGTTCTCCAATGATTCGCTGCCACAACACCAAAGCCTCTAGAAGATGCTCGGCCAGCCAAAC
*
8182 ACGTCGTTACCCTATGGTGAGTCACCACCATAGCTTCGGTGACTTACTGAGGGCCACTTTTGTGA
66 ACGTCGTTACCCTATGGTGAGTCACCACCATAGCTTCGGTGACTTACCGAGGGCCACTTTTGTGA
*
8247 CCAGTTTGAGAGCAACGTCGATGAGGCCTATAAAAAGGCCATCCA
131 CCAGTTTGAGAGCAACATCGATGAGGCCTATAAAAAGGCCATCCA
8292 C
1 C
8293 CAGTCCTAAA
Statistics
Matches: 166, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 166 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (175 bp):
CTATGTTCTCCAATGATTCGCTGCCACAACACCAAAGCCTCTAGAAGATGCTCGGCCAGCCAAAC
ACGTCGTTACCCTATGGTGAGTCACCACCATAGCTTCGGTGACTTACCGAGGGCCACTTTTGTGA
CCAGTTTGAGAGCAACATCGATGAGGCCTATAAAAAGGCCATCCA
Found at i:9451 original size:11 final size:12
Alignment explanation
Indices: 9413--9454 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 12
9403 ATATTTTAAA
9413 TTTATTACTTTAAT
1 TTTATT-CTTT-AT
9427 TATTATTCTTTAT
1 T-TTATTCTTTAT
9440 TTTATT-TTTAT
1 TTTATTCTTTAT
9451 TTTA
1 TTTA
9455 ATTACATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 9 0.33
12 5 0.19
13 3 0.11
14 5 0.19
15 5 0.19
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTATTCTTTAT
Found at i:10746 original size:33 final size:33
Alignment explanation
Indices: 10685--10749 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
10675 CAAACGTAGG
* *
10685 GTGGTCGGAAAGAAAAGAAACGATGGACGGAGA
1 GTGGTAGGAAAGAAAAGAAACGACGGACGGAGA
* **
10718 GTGGTAGGAAAGAAAATAGCCGACGGACGGAG
1 GTGGTAGGAAAGAAAAGAAACGACGGACGGAG
10750 GTTTTGGAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.40, T:0.09
Consensus pattern (33 bp):
GTGGTAGGAAAGAAAAGAAACGACGGACGGAGA
Found at i:11348 original size:8 final size:8
Alignment explanation
Indices: 11335--11364 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
11325 ATGTTAGTTC
11335 TTTTTCTT
1 TTTTTCTT
11343 TTTTTCTT
1 TTTTTCTT
*
11351 TTTCTCTT
1 TTTTTCTT
11359 TTTTTC
1 TTTTTC
11365 CCATGTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTCTT
Found at i:11351 original size:14 final size:15
Alignment explanation
Indices: 11332--11362 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
11322 TATATGTTAG
11332 TTCTTTTTCT-TTTT
1 TTCTTTTTCTCTTTT
11346 TTCTTTTTCTCTTTT
1 TTCTTTTTCTCTTTT
11361 TT
1 TT
11363 TCCCATGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTCTTTTTCTCTTTT
Found at i:11768 original size:6 final size:6
Alignment explanation
Indices: 11759--11784 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11749 AGCTGGAGTT
11759 GGTTCC GGTTCC GGTTCC GGTTCC GG
1 GGTTCC GGTTCC GGTTCC GGTTCC GG
11785 CTATAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.31, G:0.38, T:0.31
Consensus pattern (6 bp):
GGTTCC
Found at i:13139 original size:26 final size:27
Alignment explanation
Indices: 13099--13150 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
13089 ATTTTAAGTC
*
13099 TTTTTAAATTTAATAATAATA-TAATA
1 TTTTTAAATTAAATAATAATAGTAATA
*
13125 TTTTTATATTAAATAATAATAGTAAT
1 TTTTTAAATTAAATAATAATAGTAAT
13151 GCCACATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TTTTTAAATTAAATAATAATAGTAATA
Found at i:15153 original size:25 final size:24
Alignment explanation
Indices: 15125--15273 Score: 74
Period size: 25 Copynumber: 6.0 Consensus size: 24
15115 AATGTTAGAG
*
15125 AAAATAAATAAATACTAAATAAATC
1 AAAATAAA-AAATACTAAAAAAATC
* * *
15150 AAAAGAAAGAAAAACTAAAAAAATT
1 AAAATAAA-AAATACTAAAAAAATC
*
15175 AAAATAAAAAATA--AAGAAAAGT-
1 AAAATAAAAAATACTAA-AAAAATC
*
15197 ATAAATAAATAAATGAACAAAAAGAAATC
1 A-AAATAAA-AAAT--ACTAAAA-AAATC
**
15226 -AAAGGAAAAATA-TAAAGAAAATAC
1 AAAATAAAAAATACTAAA-AAAAT-C
* *
15250 AAAATAATAAAATAATAATAAAAT
1 AAAATAA-AAAATACTAAAAAAAT
15274 ATTTTTGTTC
Statistics
Matches: 95, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
22 3 0.03
23 19 0.20
24 11 0.12
25 31 0.33
26 16 0.17
27 10 0.11
28 5 0.05
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.17
Consensus pattern (24 bp):
AAAATAAAAAATACTAAAAAAATC
Found at i:15605 original size:10 final size:10
Alignment explanation
Indices: 15590--15615 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
15580 AATAAACCAC
15590 AAAAAAATAA
1 AAAAAAATAA
15600 AAAAAAATAA
1 AAAAAAATAA
15610 AAAAAA
1 AAAAAA
15616 GAAATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:15690 original size:22 final size:21
Alignment explanation
Indices: 15638--15691 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 21
15628 TAACTAGATT
15638 TAAAAAATGAAAAGAAATAAAA
1 TAAAAAAT-AAAAGAAATAAAA
*
15660 AAAGAAAATAAAAGAAA-ACATAA
1 TAA-AAAATAAAAGAAATA-A-AA
15683 TAAAAAATA
1 TAAAAAATA
15692 TATGATTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 1 0.04
22 17 0.63
23 9 0.33
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (21 bp):
TAAAAAATAAAAGAAATAAAA
Found at i:17530 original size:36 final size:37
Alignment explanation
Indices: 17456--17542 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 37
17446 AAGGTCTTGG
* *
17456 GTTTCAAGAGAAATATTTTCAAAAGTCTTTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAAGTCTTTTTTTTGT
*
17493 GTTTCAAGAGAAACAATTTCAAAGGT-TTTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAAGTCTTTTTTTTGT
17529 GTTTCAAGAGAAAC
1 GTTTCAAGAGAAAC
17543 TGTCCCAAGG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 24 0.51
37 23 0.49
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (37 bp):
GTTTCAAGAGAAACAATTTCAAAAGTCTTTTTTTTGT
Found at i:17682 original size:36 final size:37
Alignment explanation
Indices: 17597--17709 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
17587 AATATTGGTA
17597 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
*
17634 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
* *
17670 TTTCAAGAGAAACTATCTCAAAAGAGACAAAACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
17707 TTT
1 TTT
17710 TGAGTAAATT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 33 0.46
37 38 0.54
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.27
Consensus pattern (37 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
Found at i:17726 original size:37 final size:36
Alignment explanation
Indices: 17602--17733 Score: 146
Period size: 37 Copynumber: 3.6 Consensus size: 36
17592 TGGTATTTCA
17602 AGAGAAACT-GTCTCAAGAGAGACAAAACTTTGTTT
1 AGAGAAACTAGTCTCAAGAGAGACAAAACTTTGTTT
*
17637 CAAGGGAAACT-GTCTCAAGAGAGACAAAA-TTTGTTT
1 --AGAGAAACTAGTCTCAAGAGAGACAAAACTTTGTTT
*
17673 CAAGAGAAACTA-TCTCAAAAGAGACAAAACTTTGTTT
1 --AGAGAAACTAGTCTCAAGAGAGACAAAACTTTGTTT
* * *
17710 TGAGTAAATTAGTCTCAAGCGAGA
1 AGAG-AAACTAGTCTCAAGAGAGA
17734 TGACCCCTTG
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
35 3 0.04
36 38 0.45
37 43 0.51
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (36 bp):
AGAGAAACTAGTCTCAAGAGAGACAAAACTTTGTTT
Found at i:18003 original size:116 final size:116
Alignment explanation
Indices: 17798--18027 Score: 345
Period size: 116 Copynumber: 2.0 Consensus size: 116
17788 CCTGAAGATA
* * * *
17798 AATGTTGCTGGTGGGTACAATTCCCTTCGTCGTGAAGTTGAAATCGTGGATGACCTATTCGTTGT
1 AATGTTGCTGGTGAGCACAATTCCCTTCGTCGTGAAGTTGAAATCGTAGATGACCCATTCGTTGT
*
17863 GAAGTTGAGCCTTAAATTGGATATCCTTCGCCGTGAAGTTGAAATCCAATG
66 GAAGTTGAGCCTTAAATTGAATATCCTTCGCCGTGAAGTTGAAATCCAATG
* * * *
17914 AATGTTGCTGGTGAGCACGATTCCCTTTGTCGTGAAGTTGAAA-CTGTAGATGGCCCCTTCGTTG
1 AATGTTGCTGGTGAGCACAATTCCCTTCGTCGTGAAGTTGAAATC-GTAGATGACCCATTCGTTG
* *
17978 TGAAGTTGAGCCTTAACTTGAATATCCTTCGTCGTGAAGTTGAAATCCAA
65 TGAAGTTGAGCCTTAAATTGAATATCCTTCGCCGTGAAGTTGAAATCCAA
18028 GCTTATATTG
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
115 1 0.01
116 101 0.99
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (116 bp):
AATGTTGCTGGTGAGCACAATTCCCTTCGTCGTGAAGTTGAAATCGTAGATGACCCATTCGTTGT
GAAGTTGAGCCTTAAATTGAATATCCTTCGCCGTGAAGTTGAAATCCAATG
Found at i:19585 original size:64 final size:63
Alignment explanation
Indices: 19489--19629 Score: 162
Period size: 64 Copynumber: 2.2 Consensus size: 63
19479 TATATTCAAT
* * *
19489 GTGCATCGATGCACTCTTTAAAGAAAAAACATCGAATGCAA-TTGATGCATCGATGCATAAGG-A
1 GTGCATCGATGCACCCCTTAAAGAAAAAACATCGAAGGCAATTTG-TGCATCGATGCAT-AGGTA
* * * *
19552 GTGCATCGATGCATCCCCTTAAA-ATGAAAACATCGAAGGTAATTTGTGTATCGATGCATGGGTA
1 GTGCATCGATGCA-CCCCTTAAAGA-AAAAACATCGAAGGCAATTTGTGCATCGATGCATAGGTA
19616 GTGCATCGATGCAC
1 GTGCATCGATGCAC
19630 ATGTTAAAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
63 17 0.25
64 47 0.70
65 3 0.04
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCACCCCTTAAAGAAAAAACATCGAAGGCAATTTGTGCATCGATGCATAGGTA
Found at i:19662 original size:20 final size:22
Alignment explanation
Indices: 19617--19674 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
19607 GCATGGGTAG
19617 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
19641 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
19661 TGCATCGATGCACT
1 TGCATCGATGCACT
19675 TCAAGGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 18 0.53
22 1 0.03
23 2 0.06
24 13 0.38
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:20607 original size:31 final size:31
Alignment explanation
Indices: 20569--20629 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
20559 GAGTCGAGGG
*
20569 TTTACCTATG-TCTTTCGAGA-TATATGGACAA
1 TTTACCTAGGTTC-TTCGAGACT-TATGGACAA
20600 TTTACCTAGGTTCTTCGAGACTTATGGACA
1 TTTACCTAGGTTCTTCGAGACTTATGGACA
20630 GTTGCTGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 24 0.89
32 3 0.11
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (31 bp):
TTTACCTAGGTTCTTCGAGACTTATGGACAA
Found at i:21002 original size:2 final size:2
Alignment explanation
Indices: 20959--20991 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
20949 GTATGCGTGG
20959 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20992 GATGAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22622 original size:42 final size:40
Alignment explanation
Indices: 22553--22632 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 40
22543 TCTTGTCTTC
* **
22553 TTTTTTCTTTACTTTTTCCTTTGTTTTTGTTTCTCTTTTTTA
1 TTTTCTCTTTACTTTTTCC-TTCATTTT-TTTCTCTTTTTTA
* *
22595 TTTTCTCTTTGCTTTTTTCTTCATTTTTTTCTCTTTTT
1 TTTTCTCTTTACTTTTTCCTTCATTTTTTTCTCTTTTT
22633 CTTTTTGTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 11 0.33
41 6 0.18
42 16 0.48
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (40 bp):
TTTTCTCTTTACTTTTTCCTTCATTTTTTTCTCTTTTTTA
Found at i:25554 original size:4 final size:4
Alignment explanation
Indices: 25545--25595 Score: 86
Period size: 4 Copynumber: 13.0 Consensus size: 4
25535 ATGTTAGAGA
*
25545 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -ACT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
25592 AAAT
1 AAAT
25596 CAAAAGAAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 2 0.05
4 42 0.95
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:36472 original size:36 final size:36
Alignment explanation
Indices: 36429--36565 Score: 247
Period size: 36 Copynumber: 3.8 Consensus size: 36
36419 AATTGAGTAT
*
36429 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
36465 TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
* *
36501 TATCAGCTTTGGTACATTCGTTTATCAATATTATCC
1 TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
36537 TATCAGCTTTGGTACATTCGTGTATCAAT
1 TATCAGCTTTGGTACATTCGTGTATCAAT
36566 GTCCAGCACC
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 97 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.42
Consensus pattern (36 bp):
TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
Found at i:37815 original size:6 final size:6
Alignment explanation
Indices: 37800--37835 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
37790 ACCTTCCCTT
* *
37800 CCTCCG CCTCCA CCTCCA CCTCCA CCTCCT CCTCCA
1 CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA
37836 GTTCCAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.11, C:0.67, G:0.03, T:0.19
Consensus pattern (6 bp):
CCTCCA
Found at i:44379 original size:36 final size:36
Alignment explanation
Indices: 44330--44466 Score: 220
Period size: 36 Copynumber: 3.8 Consensus size: 36
44320 AATTGAGTAT
*
44330 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
*
44366 TGTCAGCTTTGGTACATTCGTGTATCAATATTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
* * *
44402 TATCAGCTTTGGTATATTCATGTATCAATATTATCC
1 TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
*
44438 TATAAGCTTTGGTACATTCGTGTATCAAT
1 TATCAGCTTTGGTACATTCGTGTATCAAT
44467 GTCCAGCACC
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 92 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.42
Consensus pattern (36 bp):
TATCAGCTTTGGTACATTCGTGTATCAATATTATCA
Found at i:50260 original size:30 final size:31
Alignment explanation
Indices: 50214--50337 Score: 110
Period size: 30 Copynumber: 4.0 Consensus size: 31
50204 GATCCTTGGC
* * *
50214 AACTGTTCATAGGTTCCGAAGAACCTAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
**
50245 AACTGT-CATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
* * *
50275 TACTATCCATATG-TCTTGAA-AGACATAGGTA
1 AACTGTCCATATGTTC-CGAAGA-ACATAGGTA
* *
50306 ATTCTGTCCATATGTTCCGTAGAACATAGGTA
1 A-ACTGTCCATATGTTCCGAAGAACATAGGTA
50338 TACTCTCGAC
Statistics
Matches: 73, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
30 27 0.37
31 22 0.30
32 21 0.29
33 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (31 bp):
AACTGTCCATATGTTCCGAAGAACATAGGTA
Found at i:51608 original size:64 final size:64
Alignment explanation
Indices: 51456--51612 Score: 162
Period size: 64 Copynumber: 2.5 Consensus size: 64
51446 CAATAAGGGT
* * **
51456 ATGCATCGATGCACTA-CTGATGCATCGGTGCATAAAATACATTCGATGTTGTATTATTATTAGG
1 ATGCATCGATGCACTACCTG-TGCATCGATGCATAAAATACATTCGATGTTCTATTATTAAAAGG
* * * *
51520 ATGCATCGATGCA-TGCCTTATGCATCGATGCACT-AATTGCATTCGATGTTTCTATT-TTAAAA
1 ATGCATCGATGCACTACC-TGTGCATCGATGCA-TAAAATACATTCGATG-TTCTATTATTAAAA
51582 -G
63 GG
51583 AGTGCATCGATGCACTACCTGTGCATCGAT
1 A-TGCATCGATGCACTACCTGTGCATCGAT
51613 ACACCTTCAA
Statistics
Matches: 77, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
63 3 0.04
64 63 0.82
65 11 0.14
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (64 bp):
ATGCATCGATGCACTACCTGTGCATCGATGCATAAAATACATTCGATGTTCTATTATTAAAAGG
Found at i:61173 original size:24 final size:24
Alignment explanation
Indices: 61140--61194 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
61130 AGGAATCCAG
61140 GAAAAAATATAAATCTTTAAGTGA
1 GAAAAAATATAAATCTTTAAGTGA
*
61164 GGAAAAATATAAATCTTTAAGTGA
1 GAAAAAATATAAATCTTTAAGTGA
61188 GAAAAAA
1 GAAAAAA
61195 AAAACCTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.56, C:0.04, G:0.15, T:0.25
Consensus pattern (24 bp):
GAAAAAATATAAATCTTTAAGTGA
Found at i:62487 original size:16 final size:16
Alignment explanation
Indices: 62466--62498 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
62456 TACAATATAA
62466 GGCCCTTCCCAATTTG
1 GGCCCTTCCCAATTTG
62482 GGCCCTTCCCAATTTG
1 GGCCCTTCCCAATTTG
62498 G
1 G
62499 CATTCACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.36, G:0.21, T:0.30
Consensus pattern (16 bp):
GGCCCTTCCCAATTTG
Found at i:62982 original size:17 final size:17
Alignment explanation
Indices: 62960--62998 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
62950 TGAATCAAAT
62960 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
62977 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
62994 -AATTA
1 TAATTA
62999 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:65753 original size:36 final size:35
Alignment explanation
Indices: 65695--65994 Score: 108
Period size: 35 Copynumber: 8.4 Consensus size: 35
65685 TAAGTATATA
*
65695 ATATATATTATGTTTTCAAAAATTCATTTTAAAAAAAC
1 ATATATA-TATGTTTTC-AAAATACATTTT-AAAAAAC
* * **
65733 ATATATATATGTTTTCAAAATACGTTTTCAAAATT
1 ATATATATATGTTTTCAAAATACATTTTAAAAAAC
* *
65768 ATATTATATACGTTTTCAAAA-A-AGTTTT-CAAAAC
1 ATA-TATATATGTTTTCAAAATACA-TTTTAAAAAAC
* ** * *
65802 TATATATTATATACATTTTCAAAA-ATGTTTT-CAAAGC
1 -ATATA-TATAT--GTTTTCAAAATACATTTTAAAAAAC
** * *
65839 -----TATATGTTTTCAAAA-ATGTTTTCAAAACC
1 ATATATATATGTTTTCAAAATACATTTTAAAAAAC
* *
65868 ATATACTATATGTTTTCAAACAT--GTTTTCAAAAAC
1 ATATA-TATATGTTTTCAAA-ATACATTTTAAAAAAC
* ** *
65903 ATATAATATACGTTTTCAAAA-ATGTTTTCAAAAATAT
1 ATAT-ATATATGTTTTCAAAATACATTTT-AAAAA-AC
*
65940 ATATTATATATGTTTTCAAAA-ACAGTTTTTTTAAAAAC
1 ATA-TATATATGTTTTCAAAATACA---TTTTAAAAAAC
65978 TATATATTATATGTTTT
1 -ATATA-TATATGTTTT
65995 TTTTTAAATA
Statistics
Matches: 209, Mismatches: 26, Indels: 53
0.73 0.09 0.18
Matches are distributed among these distances:
28 16 0.08
29 4 0.02
30 5 0.02
34 6 0.03
35 66 0.32
36 32 0.15
37 48 0.23
38 11 0.05
39 17 0.08
40 4 0.02
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (35 bp):
ATATATATATGTTTTCAAAATACATTTTAAAAAAC
Found at i:65821 original size:37 final size:37
Alignment explanation
Indices: 65736--65989 Score: 234
Period size: 35 Copynumber: 7.1 Consensus size: 37
65726 AAAAAACATA
* *
65736 TATATATGTTTTCAAAATACGTTTTCAAAA-T-TATAT
1 TATATACGTTTTCAAAA-ATGTTTTCAAAACTATATAT
*
65772 TATATACGTTTTCAAAAAAGTTTTCAAAACTATATAT
1 TATATACGTTTTCAAAAATGTTTTCAAAACTATATAT
* *
65809 TATATACATTTTCAAAAATGTTTTCAAAGC-------
1 TATATACGTTTTCAAAAATGTTTTCAAAACTATATAT
* *
65839 TATAT--GTTTTCAAAAATGTTTTCAAAACCATATAC
1 TATATACGTTTTCAAAAATGTTTTCAAAACTATATAT
*
65874 TATAT--GTTTTCAAACATGTTTTCAAAAAC-ATATA-
1 TATATACGTTTTCAAAAATGTTTTC-AAAACTATATAT
*
65908 -ATATACGTTTTCAAAAATGTTTTCAAAAATATATAT
1 TATATACGTTTTCAAAAATGTTTTCAAAACTATATAT
* * *
65944 TATATATGTTTTCAAAAACAGTTTTTTTAAAAACTATATAT
1 TATATACGTTTTC-AAAA-A--TGTTTTCAAAACTATATAT
65985 TATAT
1 TATAT
65990 GTTTTTTTTT
Statistics
Matches: 185, Mismatches: 14, Indels: 33
0.80 0.06 0.14
Matches are distributed among these distances:
28 21 0.11
30 5 0.03
33 4 0.02
34 4 0.02
35 60 0.32
36 22 0.12
37 43 0.23
38 4 0.02
39 1 0.01
41 21 0.11
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (37 bp):
TATATACGTTTTCAAAAATGTTTTCAAAACTATATAT
Found at i:65834 original size:12 final size:12
Alignment explanation
Indices: 65817--65865 Score: 62
Period size: 12 Copynumber: 3.8 Consensus size: 12
65807 ATTATATACA
65817 TTTTCAAAAATG
1 TTTTCAAAAATG
65829 TTTTCAAAGCTATATG
1 TTTTCAAA---A-ATG
65845 TTTTCAAAAATG
1 TTTTCAAAAATG
65857 TTTTCAAAA
1 TTTTCAAAA
65866 CCATATACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 20 0.61
13 1 0.03
15 1 0.03
16 11 0.33
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (12 bp):
TTTTCAAAAATG
Found at i:65871 original size:28 final size:28
Alignment explanation
Indices: 65817--65871 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
65807 ATTATATACA
* *
65817 TTTTCAAAAATGTTTTCAAAGCTATATG
1 TTTTCAAAAATGTTTTCAAAACCATATG
65845 TTTTCAAAAATGTTTTCAAAACCATAT
1 TTTTCAAAAATGTTTTCAAAACCATAT
65872 ACTATATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (28 bp):
TTTTCAAAAATGTTTTCAAAACCATATG
Found at i:65883 original size:100 final size:99
Alignment explanation
Indices: 65738--65934 Score: 274
Period size: 100 Copynumber: 2.0 Consensus size: 99
65728 AAAACATATA
**
65738 TATATGTTTTCAAAATACGTTTTCAAAATTATATTATATACGTTTTCAAAAAAGTTTTC-AAAAC
1 TATATGTTTTCAAAATACGTTTTCAAAACCATATTATATACGTTTTCAAAAAAGTTTTCAAAAAC
65802 TATATATTATATACATTTTCAAAAATGTTTTCAAAGC
66 -ATATA--ATATACATTTTCAAAAATGTTTTCAAAGC
* * * *
65839 TATATGTTTTCAAAA-ATGTTTTCAAAACCATA-TACTATATGTTTTCAAACATGTTTTCAAAAA
1 TATATGTTTTCAAAATACGTTTTCAAAACCATATTA-TATACGTTTTCAAAAAAGTTTTCAAAAA
*
65902 CATATAATATACGTTTTCAAAAATGTTTTCAAA
65 CATATAATATACATTTTCAAAAATGTTTTCAAA
65935 AATATATATT
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
98 26 0.30
99 2 0.02
100 39 0.45
101 20 0.23
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.42
Consensus pattern (99 bp):
TATATGTTTTCAAAATACGTTTTCAAAACCATATTATATACGTTTTCAAAAAAGTTTTCAAAAAC
ATATAATATACATTTTCAAAAATGTTTTCAAAGC
Found at i:65912 original size:135 final size:137
Alignment explanation
Indices: 65703--65961 Score: 373
Period size: 135 Copynumber: 1.9 Consensus size: 137
65693 TAATATATAT
**
65703 TATGTTTTCAAAAATTCATTTTAAAAAAACATATATATATGTTTTCAAAATACGTTTTCAAAATT
1 TATGTTTTCAAAAATTCATTTTAAAAAAACATATATATATGTTTTCAAAATA-GTTTTCAAAAAC
* *
65768 ATATTATATACGTTTTCAAAAAAGTTTTCAAAACTATATATTATATACATTTTCAAAAATGTTTT
65 ATATAATATACGTTTTCAAAAAAGTTTTCAAAAATATATATTATATACATTTTCAAAAATGTTTT
65833 CAAAGCTA
130 CAAAGCTA
* * *
65841 TATGTTTTCAAAAA-T-GTTTT-CAAAACCATATACTATATGTTTTCAAACAT-GTTTTCAAAAA
1 TATGTTTTCAAAAATTCATTTTAAAAAAACATATA-TATATGTTTTCAAA-ATAGTTTTCAAAAA
* **
65902 CATATAATATACGTTTTCAAAAATGTTTTCAAAAATATATATTATATATGTTTTCAAAAA
64 CATATAATATACGTTTTCAAAAAAGTTTTCAAAAATATATATTATATACATTTTCAAAAA
65962 CAGTTTTTTT
Statistics
Matches: 109, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
135 74 0.68
136 18 0.17
137 3 0.03
138 14 0.13
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (137 bp):
TATGTTTTCAAAAATTCATTTTAAAAAAACATATATATATGTTTTCAAAATAGTTTTCAAAAACA
TATAATATACGTTTTCAAAAAAGTTTTCAAAAATATATATTATATACATTTTCAAAAATGTTTTC
AAAGCTA
Found at i:79866 original size:75 final size:75
Alignment explanation
Indices: 79723--80006 Score: 372
Period size: 75 Copynumber: 3.8 Consensus size: 75
79713 TAGGGATAAG
* *
79723 GAACGGCGTCGTTCCGAGAGGGAGAAGAGCGGCGATTCCCGATAGAGAAAAGGAAAGGGAC-AGA
1 GAACGGCGTCGTTCCGAGAGGGAGAAGAGCAGTGATT-CCGATAGAGAAAAGGAAAGGGACAAG-
*
79787 GAAAAGCATCGT
64 GAAAAGCATCGA
* *
79799 GAACGGCGTCGTTCCGAGAGGGATAAGGGCAGTGATTCCGATAGAGAAAAGGAAAGGGACAAGGA
1 GAACGGCGTCGTTCCGAGAGGGAGAAGAGCAGTGATTCCGATAGAGAAAAGGAAAGGGACAAGGA
*
79864 AAAGCAACGA
66 AAAGCATCGA
* * * * * *
79874 GAACGGCGTCTTTCTGAGAGGGAGAAGAGCAGTGATTCCGATAGAGAAAAAGAGAGGGAAAAAGA
1 GAACGGCGTCGTTCCGAGAGGGAGAAGAGCAGTGATTCCGATAGAGAAAAGGAAAGGGACAAGGA
*
79939 AAAGAATCGA
66 AAAGCATCGA
* * * * *
79949 GAACGGCGCCGCTCTGAGAGAGAGAAGAGCAGTGATTCCGATAGAGAGAAGGAGAAGG
1 GAACGGCGTCGTTCCGAGAGGGAGAAGAGCAGTGATTCCGATAGAGAAAAGGA-AAGG
80007 AGAAAGAAAA
Statistics
Matches: 183, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
75 145 0.79
76 38 0.21
ACGTcount: A:0.38, C:0.14, G:0.36, T:0.11
Consensus pattern (75 bp):
GAACGGCGTCGTTCCGAGAGGGAGAAGAGCAGTGATTCCGATAGAGAAAAGGAAAGGGACAAGGA
AAAGCATCGA
Found at i:80105 original size:30 final size:33
Alignment explanation
Indices: 80055--80152 Score: 102
Period size: 33 Copynumber: 3.2 Consensus size: 33
80045 GACAGGGAAC
* **
80055 GGAGAA-AGAG-AA-GGAGAGGGAAAGAGCTAG
1 GGAGAAGAGAGAAAGGGAAAGGGAAAGAGAAAG
80085 GGAG-A-AG-GAAAGGGAAAGGGAAAGAGAAAG
1 GGAGAAGAGAGAAAGGGAAAGGGAAAGAGAAAG
*
80115 GGAGAAGAGAGAAAGGGAAAGGGAGAA-ACAAAG
1 GGAGAAGAGAGAAAGGGAAAGGGA-AAGAGAAAG
80148 GGAGA
1 GGAGA
80153 GGGAAAGAGA
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
28 1 0.02
29 5 0.09
30 23 0.40
31 1 0.02
32 2 0.03
33 24 0.41
34 2 0.03
ACGTcount: A:0.51, C:0.02, G:0.46, T:0.01
Consensus pattern (33 bp):
GGAGAAGAGAGAAAGGGAAAGGGAAAGAGAAAG
Found at i:80127 original size:15 final size:14
Alignment explanation
Indices: 80098--80142 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
80088 GAAGGAAAGG
80098 GAAAGGG-AA-AGA
1 GAAAGGGAAAGAGA
80110 GAAAGGGAGAAGAGA
1 GAAAGGGA-AAGAGA
*
80125 GAAAGGGAAAGGGA
1 GAAAGGGAAAGAGA
80139 GAAA
1 GAAA
80143 CAAAGGGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 7 0.24
14 11 0.38
15 11 0.38
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (14 bp):
GAAAGGGAAAGAGA
Found at i:80182 original size:51 final size:51
Alignment explanation
Indices: 80056--80202 Score: 154
Period size: 51 Copynumber: 2.9 Consensus size: 51
80046 ACAGGGAACG
* * * ** * *
80056 GAGAAAGAGAAGGAGAGGGAAAGAGCTAGGGAGAAGGAAAGGGAAAGGGAAA
1 GAGAAAGAG-AGAAGAGAGAAAGGGAAAGGGAGAAGCAAAGGGAGAGGGAAA
* *
80108 GAGAAAGGGAGAAGAGAGAAAGGGAAAGGGAGAAACAAAGGGAGAGGGAAA
1 GAGAAAGAGAGAAGAGAGAAAGGGAAAGGGAGAAGCAAAGGGAGAGGGAAA
* *
80159 GAGAAAGAGA-AAG-GAAGTTAAGGGAAAGGGAGAAGCGAAGGGAG
1 GAGAAAGAGAGAAGAG-AG-AAAGGGAAAGGGAGAAGCAAAGGGAG
80203 CATGACAGTG
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
49 1 0.01
50 5 0.06
51 66 0.82
52 8 0.10
ACGTcount: A:0.50, C:0.02, G:0.46, T:0.02
Consensus pattern (51 bp):
GAGAAAGAGAGAAGAGAGAAAGGGAAAGGGAGAAGCAAAGGGAGAGGGAAA
Found at i:80189 original size:6 final size:6
Alignment explanation
Indices: 80091--80172 Score: 67
Period size: 6 Copynumber: 13.2 Consensus size: 6
80081 CTAGGGAGAA
*
80091 GGAAAG GGAAAG GGAAAG AGAAAG GGAGAAG AGAGAAAG GGAAAG GGAGAA-
1 GGAAAG GGAAAG GGAAAG GGAAAG GGA-AAG -G-GAAAG GGAAAG GGA-AAG
** * * *
80142 ACAAAG GGAGAG GGAAAG AGAAAG AGAAAG G
1 GGAAAG GGAAAG GGAAAG GGAAAG GGAAAG G
80173 AAGTTAAGGG
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
5 2 0.03
6 47 0.77
7 6 0.10
8 4 0.07
9 2 0.03
ACGTcount: A:0.54, C:0.01, G:0.45, T:0.00
Consensus pattern (6 bp):
GGAAAG
Done.