Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006921.1 Hibiscus syriacus cultivar Beakdansim tig00017744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77087
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:2446 original size:17 final size:17
Alignment explanation
Indices: 2401--2447 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
2391 TTTCACCCCA
2401 ATAAAGACTAAA-TTATT
1 ATAAA-ACTAAATTTATT
2418 ATAAAACATAAATTTATT
1 ATAAAAC-TAAATTTATT
2436 -TAACAACTAAAT
1 ATAA-AACTAAAT
2448 GTATCATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.07
17 17 0.63
18 8 0.30
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAAAACTAAATTTATT
Found at i:6427 original size:21 final size:19
Alignment explanation
Indices: 6398--6451 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
6388 CCTTATATAT
* *
6398 TATTATTTTTAATTAAATACC
1 TATTTTTTTTAATTAAA-A-A
6419 TATTTTTTTT-ATTAAAAA
1 TATTTTTTTTAATTAAAAA
6437 TGATTTTTTTTAATT
1 T-ATTTTTTTTAATT
6452 TATTATTTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 1 0.03
19 10 0.34
20 9 0.31
21 9 0.31
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
TATTTTTTTTAATTAAAAA
Found at i:8788 original size:17 final size:17
Alignment explanation
Indices: 8766--8810 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
8756 CCCAATAAAG
8766 ACTAAAT-TATTATAA-A
1 ACTAAATGTATT-TAACA
8782 ACATAAATGTATTTAACA
1 AC-TAAATGTATTTAACA
8800 ACTAAATGTAT
1 ACTAAATGTAT
8811 CATACCCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 2 0.08
17 17 0.65
18 7 0.27
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (17 bp):
ACTAAATGTATTTAACA
Found at i:9317 original size:66 final size:66
Alignment explanation
Indices: 9203--9348 Score: 265
Period size: 66 Copynumber: 2.2 Consensus size: 66
9193 CTTTTGATCA
* *
9203 TAAAATTTAGAAAAGTAATGTTTTGGTCATTAAGATATTAAATAGAGGTAGTTTTTAATTTAACC
1 TAAACTTTAGATAAGTAATGTTTTGGTCATTAAGATATTAAATAGAGGTAGTTTTTAATTTAACC
9268 C
66 C
*
9269 TAAACTTTAGATAAGTAATGTTTTGGTCATTAAGATATTAAATGGAGGTAGTTTTTAATTTAACC
1 TAAACTTTAGATAAGTAATGTTTTGGTCATTAAGATATTAAATAGAGGTAGTTTTTAATTTAACC
9334 C
66 C
9335 TAAACTTTAGATAA
1 TAAACTTTAGATAA
9349 AATATTAATT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 77 1.00
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (66 bp):
TAAACTTTAGATAAGTAATGTTTTGGTCATTAAGATATTAAATAGAGGTAGTTTTTAATTTAACC
C
Found at i:25615 original size:18 final size:18
Alignment explanation
Indices: 25592--25629 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
25582 CGTGAGGATT
*
25592 GGGCAGTGGTCCAGCATG
1 GGGCAGTGGCCCAGCATG
25610 GGGCAGTGGCCCAGCATG
1 GGGCAGTGGCCCAGCATG
25628 GG
1 GG
25630 CATCTGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.24, G:0.47, T:0.13
Consensus pattern (18 bp):
GGGCAGTGGCCCAGCATG
Found at i:26985 original size:42 final size:42
Alignment explanation
Indices: 26939--27099 Score: 126
Period size: 42 Copynumber: 3.8 Consensus size: 42
26929 ATTTGTCCTG
* *
26939 AAGGACTACATATACGTCCCGAAGGACCACATATATGTCCCT
1 AAGGACTACATATACGTCCCGAAGGACCACATATATGTTCCA
* * ** *
26981 AAGGACCACATATACTTCTCTTTAAGGACCACATATATATTCCA
1 AAGGACTACATATACGTC-C-CGAAGGACCACATATATGTTCCA
* * ** * * **
27025 AAGGACAAAATATGTGT-TCTAATAAACCACATATATGTTCCA
1 AAGGACTACATATACGTCCCGAA-GGACCACATATATGTTCCA
* * *
27067 AAGGATTACATATATGTCTCGAAGGACCACATA
1 AAGGACTACATATACGTCCCGAAGGACCACATA
27100 GAACCATCGA
Statistics
Matches: 91, Mismatches: 24, Indels: 8
0.74 0.20 0.07
Matches are distributed among these distances:
41 3 0.03
42 53 0.58
43 5 0.05
44 30 0.33
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (42 bp):
AAGGACTACATATACGTCCCGAAGGACCACATATATGTTCCA
Found at i:27030 original size:21 final size:21
Alignment explanation
Indices: 26939--27099 Score: 103
Period size: 21 Copynumber: 7.6 Consensus size: 21
26929 ATTTGTCCTG
* * * *
26939 AAGGACTACATATACGTCCCG
1 AAGGACCACATATATGTTCCA
* *
26960 AAGGACCACATATATGTCCCT
1 AAGGACCACATATATGTTCCA
**
26981 AAGGACCACATATACT-TCTCTTT
1 AAGGACCACATATA-TGT-TC-CA
*
27004 AAGGACCACATATATATTCCA
1 AAGGACCACATATATGTTCCA
* * * *
27025 AAGGACAAAATATGTGTTCTA
1 AAGGACCACATATATGTTCCA
*
27046 ATA-AACCACATATATGTTCCA
1 A-AGGACCACATATATGTTCCA
** *
27067 AAGGATTACATATATG-TCTCG
1 AAGGACCACATATATGTTC-CA
27088 AAGGACCACATA
1 AAGGACCACATA
27100 GAACCATCGA
Statistics
Matches: 110, Mismatches: 23, Indels: 14
0.75 0.16 0.10
Matches are distributed among these distances:
20 3 0.03
21 85 0.77
22 6 0.05
23 16 0.15
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (21 bp):
AAGGACCACATATATGTTCCA
Found at i:29663 original size:26 final size:26
Alignment explanation
Indices: 29634--29689 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
29624 TCCGATCAGG
* *
29634 TTTAGACTATATACAAACTAGTTTCA
1 TTTAGACCACATACAAACTAGTTTCA
**
29660 TTTATCCCACATACAAACTAGTTTCA
1 TTTAGACCACATACAAACTAGTTTCA
29686 TTTA
1 TTTA
29690 TCCTACATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (26 bp):
TTTAGACCACATACAAACTAGTTTCA
Found at i:29690 original size:26 final size:26
Alignment explanation
Indices: 29644--29698 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
29634 TTTAGACTAT
29644 ATACAAACTAGTTTCATTTATCCCAC
1 ATACAAACTAGTTTCATTTATCCCAC
*
29670 ATACAAACTAGTTTCATTTATCCTAC
1 ATACAAACTAGTTTCATTTATCCCAC
29696 ATA
1 ATA
29699 TTTGCATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (26 bp):
ATACAAACTAGTTTCATTTATCCCAC
Found at i:30929 original size:16 final size:16
Alignment explanation
Indices: 30908--30938 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30898 AACCATTTTT
30908 TTTAAAAACAATTATG
1 TTTAAAAACAATTATG
*
30924 TTTAAAAACTATTAT
1 TTTAAAAACAATTAT
30939 AACTTTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (16 bp):
TTTAAAAACAATTATG
Found at i:34471 original size:30 final size:30
Alignment explanation
Indices: 34437--34515 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
34427 ATAATCATTG
34437 ATATTTTATTTAAAGTTTAGAAATAAAATA
1 ATATTTTATTTAAAGTTTAGAAATAAAATA
* * *** *
34467 ATA-TTTATTTTAAAATTCAGTGTTAAATTA
1 ATATTTTA-TTTAAAGTTTAGAAATAAAATA
*
34497 ATATTATATTTAAAGTTTA
1 ATATTTTATTTAAAGTTTA
34516 TGATCAAATT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
29 4 0.11
30 31 0.82
31 3 0.08
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.48
Consensus pattern (30 bp):
ATATTTTATTTAAAGTTTAGAAATAAAATA
Found at i:35338 original size:16 final size:17
Alignment explanation
Indices: 35305--35341 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
35295 TTTGCTATTT
*
35305 TTATTTTATATTTTAAA
1 TTATTTTATATATTAAA
35322 TTATTTT-TATATTAAA
1 TTATTTTATATATTAAA
35338 TTAT
1 TTAT
35342 AATAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTTTATATATTAAA
Found at i:50388 original size:54 final size:54
Alignment explanation
Indices: 50306--50410 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
50296 CTAGCTAATG
*
50306 CAGATGGCTATAGATTCAACAGTTACTTCAGAATGATCTTGCTCTCTAGTTCTA
1 CAGATGGCTATAGATCCAACAGTTACTTCAGAATGATCTTGCTCTCTAGTTCTA
**
50360 CAGATGGCTATAGATCCAATGGTTACTTCAGAATGATCTTGCTCTCTAGTT
1 CAGATGGCTATAGATCCAACAGTTACTTCAGAATGATCTTGCTCTCTAGTT
50411 GTAGATGATG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
CAGATGGCTATAGATCCAACAGTTACTTCAGAATGATCTTGCTCTCTAGTTCTA
Found at i:55157 original size:26 final size:28
Alignment explanation
Indices: 55108--55163 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 28
55098 TTTTTTTATA
*
55108 TTTTTATTCTTTATATAATTTAAAATACT
1 TTTTTATTATTTATATAA-TTAAAATACT
55137 TTTTTA-TATTTATATAA-TAAAATACT
1 TTTTTATTATTTATATAATTAAAATACT
55163 T
1 T
55164 AAAAACCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 10 0.38
28 10 0.38
29 6 0.23
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTTTATTATTTATATAATTAAAATACT
Found at i:57487 original size:35 final size:36
Alignment explanation
Indices: 57398--57503 Score: 178
Period size: 35 Copynumber: 2.9 Consensus size: 36
57388 CAAAATCGTC
*
57398 ATTTCCAATACTAGTGGGATAACCTAATTTGAGCAT
1 ATTTCAAATACTAGTGGGATAACCTAATTTGAGCAT
57434 ATTTGCAAATACTAGTGGGATAACCTAATTT-AGCAT
1 ATTT-CAAATACTAGTGGGATAACCTAATTTGAGCAT
*
57470 ATTTCTAATACTAGTGGGATAACCTAATTTGAGC
1 ATTTCAAATACTAGTGGGATAACCTAATTTGAGC
57504 TTTATCAACA
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
35 25 0.38
36 16 0.24
37 25 0.38
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (36 bp):
ATTTCAAATACTAGTGGGATAACCTAATTTGAGCAT
Found at i:58118 original size:31 final size:31
Alignment explanation
Indices: 58067--58129 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
58057 AATTCAGTGA
*
58067 ATTCAATACGTCCTTCTCACTAGGAACTCCC
1 ATTCAATACGTCCTTATCACTAGGAACTCCC
* *
58098 ATTCTATATGTCCTTATCACTAGGAACTCCC
1 ATTCAATACGTCCTTATCACTAGGAACTCCC
58129 A
1 A
58130 AACTCTTGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (31 bp):
ATTCAATACGTCCTTATCACTAGGAACTCCC
Found at i:59023 original size:20 final size:20
Alignment explanation
Indices: 58998--59048 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
58988 TGAAAAATTA
*
58998 ATTGGTGCATCCATGCATGG
1 ATTGGTTCATCCATGCATGG
**
59018 ATTGGTTCATCGGTGCATGG
1 ATTGGTTCATCCATGCATGG
59038 ATTGGTTCATC
1 ATTGGTTCATC
59049 GGTGCATCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (20 bp):
ATTGGTTCATCCATGCATGG
Found at i:59049 original size:20 final size:20
Alignment explanation
Indices: 59011--59055 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
59001 GGTGCATCCA
59011 TGCATGGATTGGTTCATCGG
1 TGCATGGATTGGTTCATCGG
59031 TGCATGGATTGGTTCATCGG
1 TGCATGGATTGGTTCATCGG
59051 TGCAT
1 TGCAT
59056 CACTCTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.36
Consensus pattern (20 bp):
TGCATGGATTGGTTCATCGG
Found at i:59427 original size:16 final size:17
Alignment explanation
Indices: 59407--59441 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
59397 TACTTTAACA
59407 CTTCTCCCTTAAAAAACTT
1 CTTCTCCCTTAAAAAA--T
59426 CTTCTCCCTTAAAAAA
1 CTTCTCCCTTAAAAAA
59442 ACTTAATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (17 bp):
CTTCTCCCTTAAAAAAT
Found at i:61753 original size:23 final size:22
Alignment explanation
Indices: 61723--61802 Score: 90
Period size: 23 Copynumber: 3.6 Consensus size: 22
61713 GCATGGCCTT
61723 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
61745 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
61767 GTGTATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* *
61789 ATGCATCCATGCAC
1 GTGCATCGATGCAC
61803 TGTTAGGTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
21 15 0.33
22 15 0.33
23 16 0.35
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:61777 original size:44 final size:42
Alignment explanation
Indices: 61727--61821 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 42
61717 GGCCTTGTGC
* **
61727 ATCGATGCACATTCAAGGCGTGCATCGGTGCACCT-TCATGGTGT
1 ATCGATGCACATTCAAGG-ATGCATCCATGCA-CTGTCA-GGTGT
*
61771 ATCGATGCACATTCAAGGATGCATCCATGCACTGTTAGGTGT
1 ATCGATGCACATTCAAGGATGCATCCATGCACTGTCAGGTGT
61813 ATCGATGCA
1 ATCGATGCA
61822 TGAAGCACAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 16 0.35
43 12 0.26
44 18 0.39
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.27
Consensus pattern (42 bp):
ATCGATGCACATTCAAGGATGCATCCATGCACTGTCAGGTGT
Found at i:61779 original size:21 final size:20
Alignment explanation
Indices: 61723--61821 Score: 74
Period size: 21 Copynumber: 4.7 Consensus size: 20
61713 GCATGGCCTT
61723 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTC-A-G
* *
61745 CGTGCATCGGTGCACCTTCATG
1 -GTGCATCGATGCACATTCA-G
*
61767 GTGTATCGATGCACATTCAAG
1 GTGCATCGATGCACATTC-AG
* *
61788 GATGCATCCATGCAC-TGTTAG
1 G-TGCATCGATGCACAT-TCAG
*
61809 GTGTATCGATGCA
1 GTGCATCGATGCA
61822 TGAAGCACAA
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
20 10 0.16
21 21 0.34
22 15 0.24
23 16 0.26
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (20 bp):
GTGCATCGATGCACATTCAG
Found at i:67751 original size:11 final size:11
Alignment explanation
Indices: 67735--67759 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67725 AAATACTTTG
67735 TAAAAATTGTT
1 TAAAAATTGTT
67746 TAAAAATTGTT
1 TAAAAATTGTT
67757 TAA
1 TAA
67760 GTATAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (11 bp):
TAAAAATTGTT
Found at i:72473 original size:19 final size:19
Alignment explanation
Indices: 72449--72486 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72439 AAAGCTGATA
72449 CAGTTTTCATGGTTTAGTG
1 CAGTTTTCATGGTTTAGTG
72468 CAGTTTTCATGGTTTAGTG
1 CAGTTTTCATGGTTTAGTG
72487 TTTATTGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.47
Consensus pattern (19 bp):
CAGTTTTCATGGTTTAGTG
Found at i:73990 original size:35 final size:35
Alignment explanation
Indices: 73899--74005 Score: 162
Period size: 36 Copynumber: 3.0 Consensus size: 35
73889 CAAAATCGTC
73899 ATTTCCAATATTAGTGGGATAACCTAATTTGAGCAT
1 ATTT-CAATATTAGTGGGATAACCTAATTTGAGCAT
73935 ATTTGCAATATTAGTGGGATAACCTAATTT-AGCAT
1 ATTT-CAATATTAGTGGGATAACCTAATTTGAGCAT
* *
73970 ATTTCTAATACTAGTAGGATAACCTAATTTGAGCAT
1 ATTTC-AATATTAGTGGGATAACCTAATTTGAGCAT
74006 TATCAACAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
34 1 0.02
35 31 0.47
36 34 0.52
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (35 bp):
ATTTCAATATTAGTGGGATAACCTAATTTGAGCAT
Found at i:76682 original size:25 final size:25
Alignment explanation
Indices: 76653--76716 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
76643 AGGATAAAGA
76653 TAAAAGAGATTTA-CATCTTCTTTAT
1 TAAAAGA-ATTTATCATCTTCTTTAT
* * * *
76678 TAAAATAAATTATTATCTTTTTTAT
1 TAAAAGAATTTATCATCTTCTTTAT
76703 TAAAAGATATTTAT
1 TAAAAGA-ATTTAT
76717 TACCTCTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 4 0.13
25 22 0.71
26 5 0.16
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (25 bp):
TAAAAGAATTTATCATCTTCTTTAT
Found at i:76726 original size:26 final size:25
Alignment explanation
Indices: 76673--76729 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
76663 TTACATCTTC
* * *
76673 TTTATTAAAATAAATTATTATCTTT
1 TTTATTAAAAGAAATTATTACCTCT
*
76698 TTTATTAAAAGATATTTATTACCTCT
1 TTTATTAAAAGA-AATTATTACCTCT
76724 TTTATT
1 TTTATT
76730 CCAATTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 11 0.41
26 16 0.59
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (25 bp):
TTTATTAAAAGAAATTATTACCTCT
Done.