Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006923.1 Hibiscus syriacus cultivar Beakdansim tig00017750_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57616
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Found at i:2071 original size:28 final size:28
Alignment explanation
Indices: 2038--2124 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 28
2028 CCAATTTTGT
2038 TTAGTGACCAAAACATAAATTTTAAAAG
1 TTAGTGACCAAAACATAAATTTTAAAAG
** * **
2066 TTAGTG-CCAAAGTAGAAATTAGAAAAG
1 TTAGTGACCAAAACATAAATTTTAAAAG
** *
2093 TTTAG-GACCAAAAGTTAATTTTTAAAAG
1 -TTAGTGACCAAAACATAAATTTTAAAAG
2121 TTAG
1 TTAG
2125 GTATTTTGAC
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
27 21 0.47
28 24 0.53
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (28 bp):
TTAGTGACCAAAACATAAATTTTAAAAG
Found at i:2084 original size:27 final size:27
Alignment explanation
Indices: 2054--2125 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 27
2044 ACCAAAACAT
2054 AAATTTTAAAAGTTAGTG-CC-AAAGTAG
1 AAATTTTAAAAGTTAG-GACCAAAAGT-G
** *
2081 AAATTAGAAAAGTTTAGGACCAAAAGTT
1 AAATTTTAAAAG-TTAGGACCAAAAGTG
*
2109 AATTTTTAAAAGTTAGG
1 AAATTTTAAAAGTTAGG
2126 TATTTTGACA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
27 16 0.44
28 15 0.42
29 5 0.14
ACGTcount: A:0.46, C:0.06, G:0.18, T:0.31
Consensus pattern (27 bp):
AAATTTTAAAAGTTAGGACCAAAAGTG
Found at i:11142 original size:17 final size:17
Alignment explanation
Indices: 11116--11148 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
11106 TTTTGTTTTT
11116 AATTTATTTAAGTATTTA
1 AATTTATTTAA-TATTTA
11134 AATTT-TTTAATATTT
1 AATTTATTTAATATTT
11149 TATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
AATTTATTTAATATTTA
Found at i:11150 original size:17 final size:19
Alignment explanation
Indices: 11111--11150 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
11101 TAATATTTTG
*
11111 TTTTTAATTTATTTAAGTA
1 TTTTAAATTTATTTAAGTA
11130 -TTTAAATTT-TTTAA-TA
1 TTTTAAATTTATTTAAGTA
11146 TTTTA
1 TTTTA
11151 TTTAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 2 0.11
17 9 0.47
18 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTAAATTTATTTAAGTA
Found at i:12726 original size:33 final size:34
Alignment explanation
Indices: 12689--12762 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
12679 TAATACTTAC
12689 TTTATTTCATT-AATTTGGTTGG-ATTTATT-TTAA
1 TTTATTTCATTAAATTT-GTTGGAATTT-TTGTTAA
**
12722 TTTATTTTGTTAAATTTGTTGGAATTTTTGTTAA
1 TTTATTTCATTAAATTTGTTGGAATTTTTGTTAA
*
12756 TGTATTT
1 TTTATTT
12763 TGGTTAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
33 16 0.46
34 19 0.54
ACGTcount: A:0.23, C:0.01, G:0.14, T:0.62
Consensus pattern (34 bp):
TTTATTTCATTAAATTTGTTGGAATTTTTGTTAA
Found at i:12756 original size:34 final size:34
Alignment explanation
Indices: 12700--12776 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 34
12690 TTATTTCATT
*
12700 AATTTGGTTGGATTTATTTTAATTTATTTT-GTTA
1 AATTT-GTTGGATTTATTTTAATGTATTTTGGTTA
12734 AATTTGTTGGAATTT-TTGTTAATGTATTTTGGTTA
1 AATTTGTTGG-ATTTATT-TTAATGTATTTTGGTTA
*
12769 ATTTTGTT
1 AATTTGTT
12777 TATTACCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
33 7 0.18
34 20 0.53
35 11 0.29
ACGTcount: A:0.22, C:0.00, G:0.17, T:0.61
Consensus pattern (34 bp):
AATTTGTTGGATTTATTTTAATGTATTTTGGTTA
Found at i:15474 original size:20 final size:20
Alignment explanation
Indices: 15445--15482 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15435 TTTCACAGGA
*
15445 ATGCACCGATGCACCAATCC
1 ATGCACCGATGCAACAATCC
*
15465 ATGCATCGATGCAACAAT
1 ATGCACCGATGCAACAAT
15483 GAATAAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCACCGATGCAACAATCC
Found at i:15534 original size:19 final size:19
Alignment explanation
Indices: 15510--15580 Score: 124
Period size: 19 Copynumber: 3.7 Consensus size: 19
15500 AATGCATTAT
15510 ATGCATCGATGCACATACC
1 ATGCATCGATGCACATACC
*
15529 ATGCATCGATTCACATACC
1 ATGCATCGATGCACATACC
*
15548 ATGCATCGATGCATATACC
1 ATGCATCGATGCACATACC
15567 ATGCATCGATGCAC
1 ATGCATCGATGCAC
15581 TTAGGTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (19 bp):
ATGCATCGATGCACATACC
Found at i:15690 original size:64 final size:65
Alignment explanation
Indices: 15547--15690 Score: 186
Period size: 65 Copynumber: 2.2 Consensus size: 65
15537 ATTCACATAC
* * * * *
15547 CATGCATCGATGCATATACCATGCATCGATGCACTTAGGTTTTTATGAAAACATCGAATGCATTT
1 CATGCATCGATGCACATACCATGCATCGATGCACTCAGGTTGTTATGAAAACATCGAATACACTT
* *
15612 GATGCATCGATGCACA-AGCCATGCATCGATGCACTCGGGCTTGTT-TG-AAACATCGAATACAC
1 CATGCATCGATGCACATA-CCATGCATCGATGCACTCAGG-TTGTTATGAAAACATCGAATACAC
15674 TT
64 TT
15676 CATGCATCGATGCAC
1 CATGCATCGATGCAC
15691 TCTTAGTGCA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
64 30 0.43
65 35 0.51
66 4 0.06
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (65 bp):
CATGCATCGATGCACATACCATGCATCGATGCACTCAGGTTGTTATGAAAACATCGAATACACTT
Found at i:26681 original size:31 final size:31
Alignment explanation
Indices: 26646--26721 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
26636 TATGCAATGG
*
26646 TCATTAGATTTATCGAACTACTACAAAATAA
1 TCATTAAATTTATCGAACTACTACAAAATAA
* * * * *
26677 TCATTATATTTTAT-TAATTATTACAAAATGA
1 TCATTA-AATTTATCGAACTACTACAAAATAA
26708 TCATTAAATTTATC
1 TCATTAAATTTATC
26722 ATTATAATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
30 6 0.17
31 25 0.69
32 5 0.14
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (31 bp):
TCATTAAATTTATCGAACTACTACAAAATAA
Found at i:28455 original size:19 final size:19
Alignment explanation
Indices: 28431--28470 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
28421 TCAAAGTTCC
28431 AATTATAATT-TAAATTTGA
1 AATTAT-ATTATAAATTTGA
*
28450 AATTATTTTATAAATTTGA
1 AATTATATTATAAATTTGA
28469 AA
1 AA
28471 ATCATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
AATTATATTATAAATTTGA
Found at i:31087 original size:20 final size:21
Alignment explanation
Indices: 31034--31087 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
31024 AAATGTATGC
* *
31034 GAGTATCGATACTAGGCCTTT
1 GAGTATCGATACTAGACCCTT
* * *
31055 CAGTATTGGTACTA-ACCCTT
1 GAGTATCGATACTAGACCCTT
31075 GAGTATCGATACT
1 GAGTATCGATACT
31088 CCATAACAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (21 bp):
GAGTATCGATACTAGACCCTT
Found at i:32606 original size:59 final size:59
Alignment explanation
Indices: 32495--32607 Score: 131
Period size: 59 Copynumber: 1.9 Consensus size: 59
32485 AAACTGACCC
* ** **
32495 GACTTACTATATACTCGAATAAAACTGAAACCTGAAATAACCTGACCTGACCCAGATAT
1 GACTTACTATATACTCGAATAAAACTAAAACCCAAAATAACCCAACCTGACCCAGATAT
* *
32554 GACTTACTATATATTCGAATAAAA-TCAAAACCCAAAATGACCCAATCC-GACCCA
1 GACTTACTATATACTCGAATAAAACT-AAAACCCAAAATAACCCAA-CCTGACCCA
32608 AACCAGACTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
58 1 0.02
59 42 0.93
60 2 0.04
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.22
Consensus pattern (59 bp):
GACTTACTATATACTCGAATAAAACTAAAACCCAAAATAACCCAACCTGACCCAGATAT
Found at i:33993 original size:4 final size:4
Alignment explanation
Indices: 33984--37664 Score: 7146
Period size: 4 Copynumber: 926.8 Consensus size: 4
33974 AAATGTATCG
*
33984 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34032 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34080 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34128 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34176 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34222 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34270 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34318 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34366 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34414 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34462 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34508 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34554 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34602 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34650 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34698 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34746 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34794 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34842 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34890 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34938 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34986 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35034 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35082 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35130 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35178 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35226 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35272 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35320 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
35368 ATAC ATAC ATAC ATAC ACAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35417 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35465 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35513 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35559 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35607 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35655 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35701 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35749 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35797 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35845 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35893 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35939 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
35987 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36035 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36083 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36131 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36179 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36227 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36275 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36321 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36369 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36417 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36465 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36513 ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36558 ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36604 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36652 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36700 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36748 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36796 AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36842 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36890 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36938 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
36986 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37032 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37080 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37128 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37176 ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37222 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37270 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37318 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37366 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37414 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37462 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37510 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37558 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37606 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37654 ATAC ATAC ATA
1 ATAC ATAC ATA
37665 TATATATATT
Statistics
Matches: 3645, Mismatches: 4, Indels: 56
0.98 0.00 0.02
Matches are distributed among these distances:
2 26 0.01
3 3 0.00
4 3613 0.99
5 3 0.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:38248 original size:226 final size:226
Alignment explanation
Indices: 37817--38964 Score: 1720
Period size: 226 Copynumber: 5.1 Consensus size: 226
37807 TAACAAATCA
* * * *
37817 AGTAATTAATCGCTTATGTTATCGTCGGATTTCTAAGGCTCTC-TTAGCTTAAACTTTGGTAACA
1 AGTAATTAATCGGTTATGTTATCGTCAGATTCCTAAGGCTC-CATCAGCTTAAACTTTGGTAACA
37881 TTTTAGGCGTTACCTAATATG-T--TAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTA
65 TTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTA
** **
37943 TCGTC-GATTTCTAAAACCCTGTCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGCGCTA
130 TCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGCGCTA
*
38007 CCTAATATGTTATTATGGTTGATAATGTTTCC
195 CCTAATATGTTATTATGCTTGATAATGTTTCC
** *
38039 AGTAATTAATCAATTATGTTATCGTCAGATTCCTATGGCTCCATCAGCTTAAACTTTGGTAACAT
1 AGTAATTAATCGGTTATGTTATCGTCAGATTCCTAAGGCTCCATCAGCTTAAACTTTGGTAACAT
* * *
38104 TTTAGGTGTTACCAAATATGTTGATAACACTGATAACAAATTAAGTAATTAACCTATTTTGTTAT
66 TTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTAT
* *
38169 CGTCGGATTTCTAAGGCCCCATTAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTAC
131 CGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGCGCTAC
38234 CTAATATGTTATTATGCTTGATAATGTTTCC
196 CTAATATGTTATTATGCTTGATAATGTTTCC
* * * *
38265 AGTAATTAAGT-GGTTATGTTATCATCGGATTTCTAAGGCTTCATCAGCTTAAACTTTGGTAACA
1 AGTAATTAA-TCGGTTATGTTATCGTCAGATTCCTAAGGCTCCATCAGCTTAAACTTTGGTAACA
* * * *
38329 TTTTAGGCGTTACCTAATATATTGATAATACTCATGACAAATTAAGTAATTAACATATTTTGTTA
65 TTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTA
* * * * * * *
38394 TCTTCGGATTTCTAAGACCCCATCAGCTTTAAAAA-GAAGTTACATATTACGTTACATAAACACT
130 TCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAATG-CGCTACCTATTACGTTACATAAGCGCT
38458 ACCTAATATGTTATTATGCTTGATAATGTTTCC
194 ACCTAATATGTTATTATGCTTGATAATGTTTCC
* *
38491 AATAATTAATTGGTTATGTTATCGTC-GTATTCCTAAGGCTCCATCAGCTTAAACTTTGGTAACA
1 AGTAATTAATCGGTTATGTTATCGTCAG-ATTCCTAAGGCTCCATCAGCTTAAACTTTGGTAACA
* * *
38555 TTTTAGCCGTTACCTAATATGTTGATAATACTAATAACAAATTAAGTAATTAACTTATTTTGTTA
65 TTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTA
* *
38620 TTGTCAGATTTCTAAGGCCCCATCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGCGCTA
130 TCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGCGCTA
* * **
38685 TCTAATATGTTATTATACTTGATAATGTTTGT
195 CCTAATATGTTATTATGCTTGATAATGTTTCC
* * * * *
38717 AGTAATTAACCGGTTATGTTATCATCAGGTTCTTAAGGCTCCATCATCTTAAACTTTGGTAACAT
1 AGTAATTAATCGGTTATGTTATCGTCAGATTCCTAAGGCTCCATCAGCTTAAACTTTGGTAACAT
* *
38782 TTTAGGAGTTACCTAATATATTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTAT
66 TTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTAT
* *
38847 CGTCGGATTTCTAAGG-CTCATCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGAGCTAC
131 CGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGCGCTAC
*
38911 CTAATATGTTATTATGTTTGATAATGTTTCC
196 CTAATATGTTATTATGCTTGATAATGTTTCC
38942 AGTAATTAATCGGTTATGTTATC
1 AGTAATTAATCGGTTATGTTATC
38965 ATCAATATTT
Statistics
Matches: 833, Mismatches: 82, Indels: 19
0.89 0.09 0.02
Matches are distributed among these distances:
221 1 0.00
222 75 0.09
223 1 0.00
225 141 0.17
226 612 0.73
227 3 0.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (226 bp):
AGTAATTAATCGGTTATGTTATCGTCAGATTCCTAAGGCTCCATCAGCTTAAACTTTGGTAACAT
TTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTAT
CGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAATGCGCTACCTATTACGTTACATAAGCGCTAC
CTAATATGTTATTATGCTTGATAATGTTTCC
Found at i:38420 original size:108 final size:108
Alignment explanation
Indices: 38281--38873 Score: 355
Period size: 108 Copynumber: 5.3 Consensus size: 108
38271 TAAGTGGTTA
*
38281 TGTTATCATCGGATTTCTAAGGCTTCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAA
1 TGTTATCATCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAA
*
38346 TATATTGATAATACTCATGACAAATTAAGTAATTAACATATTT
66 TATATTGATAATACTCATGACAAATTAAGTAATTAACCTATTT
* * * ***** * * *
38389 TGTTATCTTCGGATTTCTAAGACCCCATCAGCTTTAAAAAGAAGTTACATATTA--CGTTACATA
1 TGTTATCATCGGATTTCTAAGGCTCCATCAGC-TTAAACTTTGGTAACATTTTAGGCGTTACCT-
* * * * * * * *
38452 AACACTACCTAATATGTTATTA-TGCTTGATAATGTTTCCAA-TAATTAA-TTGGTTA
64 -A-A-TA--T-AT-TGATAATACT-CATGACAA--ATT--AAGTAATTAACCT-ATTT
* * * *
38507 TGTTATCGTCGTATTCCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGCCGTTACCTAA
1 TGTTATCATCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAA
* * * *
38572 TATGTTGATAATACTAATAACAAATTAAGTAATTAACTTATTT
66 TATATTGATAATACTCATGACAAATTAAGTAATTAACCTATTT
** * * ** * *
38615 TGTTATTGTCAGATTTCTAAGGCCCCATCAGCTTTAAA-AATGCGCTACCTATTACGTTACATAA
1 TGTTATCATCGGATTTCTAAGGCTCCATCAGC-TTAAACTTTG-G-TAAC-A-T---TT---TAG
* * * * * * * ** *
38679 GCGCTATCTAATATGTT-ATTATACT--TGATAATGTTTGTAGTAATTAACCGGTTA
55 GCGTTACCTAATATATTGATAATACTCATGACAA--ATT-AAGTAATTAACCTATTT
* *
38733 TGTTATCATCAGG--TTCTTAAGGCTCCATCATCTTAAACTTTGGTAACATTTTAGGAGTTACCT
1 TGTTATCATC-GGATTTC-TAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCT
* *
38796 AATATATTGATAATACTGATAACAAATTAAGTAATTAACCTATTT
64 AATATATTGATAATACTCATGACAAATTAAGTAATTAACCTATTT
*
38841 TGTTATCGTCGGATTTCTAAGGCT-CATCAGCTT
1 TGTTATCATCGGATTTCTAAGGCTCCATCAGCTT
38874 TAAAAATGCG
Statistics
Matches: 356, Mismatches: 87, Indels: 85
0.67 0.16 0.16
Matches are distributed among these distances:
107 19 0.05
108 110 0.31
109 37 0.10
110 4 0.01
111 19 0.05
112 3 0.01
113 2 0.01
114 4 0.01
115 21 0.06
116 4 0.01
117 36 0.10
118 87 0.24
119 10 0.03
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (108 bp):
TGTTATCATCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAA
TATATTGATAATACTCATGACAAATTAAGTAATTAACCTATTT
Found at i:44470 original size:201 final size:199
Alignment explanation
Indices: 43964--45752 Score: 870
Period size: 200 Copynumber: 9.1 Consensus size: 199
43954 GCGTAATTTT
* * ** * * *
43964 AAAAAGTGTCGACACGAATTTAAAAAGTGTCGACACATTATGT-TGACCTATTTTCT-ATTTACA
1 AAAAAGTATCGACACAAATAAAAAA-GTGTCGATACATTATGTAT-ACCTATTTTCTCA-TAAAA
* * *
44027 CCGGTAAATTTCAATCGGTTACATTGTAAATTGACCTATTACATTATAATTTCTGGTCTCGATGT
63 CCGGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATGGTCTCGATGT
* * * * * * *
44092 ATTTAAGGTCGATACTTTTTATAAATGTATCGACACTTTATGCGTGGACGTCGTTT-GGCATTCG
128 ATTTAGGGTCGATAC-TTTTATAAATGTATCGACACTTTATGTGTGCACATAGTTTGGGAATTCA
*
44156 TTATAGAC
192 TTATGGAC
* * * * * * *
44164 ATAAAGTATCGAAACAAATGCAAAAAGTATCGATACATTATGTAGACCTATTTGCTCATAAAACT
1 AAAAAGTATCGACACAAAT-AAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACC
* * *
44229 GGTAAATTTAAACCAGTTACATTGTAAAGTGACCTATTACATTATAATTTTTGGTCTCGATGTAT
65 GGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATGGTCTCGATGTAT
*
44294 TTGGGGTCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCACATAGTTTGGGAATTCATT
130 TTAGGGTCGATACTTTT-ATAAATGTATCGACACTTTATGTGTGCACATAGTTTGGGAATTCATT
*
44359 ATGGAT
194 ATGGAC
* *
44365 AAAAAGTATCGACACAAATAAATAAAGTGTTGATACTTTATGTATACCTATTTTCTCATAAAACC
1 AAAAAGTATCGACACAAATAAA-AAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACC
* * * * *
44430 GGTAAATTTAAATCGGTTACATTGTAAAGTGGCCTATTACATTAT-ATCTATGTGTTTCGATATT
65 GGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATG-GTCTCGATGTA
** * * * * *
44494 TTTAGTATCGACACTTGTTATAAATGTATCGACAC-TT-TGTCGTGCACTTGGTTTGGAAAATAC
129 TTTAGGGTCGATACTT-TTATAAATGTATCGACACTTTATGT-GTGCACATAGTTTGG-GAATTC
44557 ATTATGGAC
191 ATTATGGAC
* * * *** ** *** * * *
44566 AAAAAGTGTCAAGACTTGTTGTATTTGTATCGATACATTATGTATACTTGTTTTCTCAT-AAACC
1 AAAAAGTATCGACAC-AAATAAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACC
* ** ** * * * ** * *
44630 GATGTATTTAGGTTGGTTACATTTTTATTTTACCTATTACATTAT-ATCTATGTGAT-TCGATGT
65 GGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATG-G-TCTCGATGT
* ** * * * ** *
44693 TTTTAGTATCGACACTTTT-T---CG--T-G-CAC----T-TG-G----T--TTGGAAAATACAT
128 ATTTAGGGTCGATACTTTTATAAATGTATCGACACTTTATGTGTGCACATAGTTTGGGAATTCAT
*
44738 TATGGAA
193 TATGGAC
*** ** *** *
44745 AAAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACC
1 AAAAAGTATCGACAC-AAATAAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACC
* *
44810 GGTAAATTTAAA-CTGGTTACATTGTAAAGTAACCTATTACATTATAA-TTATAGGTTTCGATGT
65 GGTAAATTTAAATC-GGTTACATTGTAAAGTGACCTATTACATTATAATTTAT-GGTCTCGATGT
* * * * * * * ** *
44873 ATTCAGGATCGACACATGTTATAAATGTATCGACACTTT-TTTGTGCA-TTGGTTTGAAAAATAC
128 ATTTAGGGTCGATAC-TTTTATAAATGTATCGACACTTTATGTGTGCACATAGTTTG-GGAATTC
44936 ATTATGGAC
191 ATTATGGAC
* *** ** *** * * *
44945 AAAAAGTATTGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACC
1 AAAAAGTATCGACAC-AAATAAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACC
** *** * ** * *
45009 GGTGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTAT-ATCTATGTGAT-TCGATGT
65 GGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATG-G-TCTCGATGT
* ** * * * * *
45072 TTTTAGTATCGACACTTGTTATAAATGTATCGACACTTT-T-TCGTGCACTTGGTTTGGAAAATA
128 ATTTAGGGTCGATACTT-TTATAAATGTATCGACACTTTATGT-GTGCACATAGTTTGG-GAATT
45135 CATTATGGAC
190 CATTATGGAC
*** ** *** * * *
45145 AAAAAGTATCGACACTTGTTGGATTTGTGGCGATACTTTATGTATACCTATTTTCTCATAAAACT
1 AAAAAGTATCGACAC-AAATAAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACC
* *
45210 GGTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAA-TTATAGGTTTCGATGTA
65 GGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTAT-GGTCTCGATGTA
* * * * * * * *
45274 TTT-GGGATCGACACATGTCATAAATGTATCGACACTTT-TTTGTGCA-TTTGTTTGGAAAATAC
129 TTTAGGG-TCGATAC-TTTTATAAATGTATCGACACTTTATGTGTGCACATAGTTTGG-GAATTC
45336 ATTATGGAC
191 ATTATGGAC
*** ** *** * * *
45345 AAAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACC
1 AAAAAGTATCGACAC-AAATAAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACC
** *** * ** * * * *
45409 GGTGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTAT-ATCTATGTGTTTCAATG-A
65 GGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATG-GTCTCGATGTA
** * * * *
45472 TTTTAGTTTCGATGA--TTT-T--A-GTATCGACAC-TT-TGTCGTGCACTTGGTTTGGAAAATA
129 -TTTAGGGTCGAT-ACTTTTATAAATGTATCGACACTTTATGT-GTGCACATAGTTTGG-GAATT
45529 CATTATGGAC
190 CATTATGGAC
* *** * *** * * * *
45539 AAAAAGTATCGATACTTGTTGGATTTA-TGTCGATACTTTATGTATACTTGTTCTCTCA-AAAAC
1 AAAAAGTATCGACAC-AAAT-AAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAAC
* ** * * * * * * *
45602 CTGTTTATTTAGA-CTGTTACATTGTTAATTTACTTATTACATTATAA-TTATGTGTTTCGATGT
64 CGGTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATG-GTCTCGATGT
* * * * * * * *
45665 -TTTTGGGATTGATACTTATTATAAATGTATCGACACTTT-TCTCGTGCACTTGGTTTAGAAATA
128 ATTTAGGG-TCGATACTT-TTATAAATGTATCGACACTTTATGT-GTGCACATAGTTTGGGAATT
45728 CATTATGGAC
190 CATTATGGAC
* *
45738 AACATGTATCGACAC
1 AAAAAGTATCGACAC
45753 GAATGAATAA
Statistics
Matches: 1323, Mismatches: 194, Indels: 145
0.80 0.12 0.09
Matches are distributed among these distances:
179 66 0.05
180 64 0.05
181 5 0.00
182 2 0.00
185 1 0.00
186 1 0.00
187 2 0.00
188 2 0.00
189 4 0.00
191 3 0.00
192 11 0.01
193 64 0.05
194 91 0.07
195 6 0.00
196 2 0.00
197 2 0.00
198 9 0.01
199 198 0.15
200 493 0.37
201 289 0.22
202 8 0.01
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.40
Consensus pattern (199 bp):
AAAAAGTATCGACACAAATAAAAAAGTGTCGATACATTATGTATACCTATTTTCTCATAAAACCG
GTAAATTTAAATCGGTTACATTGTAAAGTGACCTATTACATTATAATTTATGGTCTCGATGTATT
TAGGGTCGATACTTTTATAAATGTATCGACACTTTATGTGTGCACATAGTTTGGGAATTCATTAT
GGAC
Found at i:44989 original size:200 final size:201
Alignment explanation
Indices: 44698--45752 Score: 1408
Period size: 200 Copynumber: 5.3 Consensus size: 201
44688 GATGTTTTTA
*
44698 GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGAAAAAAAGTATCGACACTTG
1 GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
* * * * *
44763 TTGGATTTGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACTGGTT
66 TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAAACCGGTATATTTAGACCGGTT
* * * *
44828 ACATTGTAAAGTAACCTATTACATTATAATTATAG-GTTTCGATGTATTCAGGATCGACACATGT
131 ACATTGTTAATTTACCTATTACATTATAATTAT-GTGTTTCGATGTATTTAGGATCGACACATGT
44892 TATAAAT
195 TATAAAT
* * *
44899 GTATCGACACTTTTTTGTGCA-TTGGTTTGAAAAATACATTATGGACAAAAAGTATTGACACTTG
1 GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
* *
44963 TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACCGGTGTATTTAGGCCGGTT
66 TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAAACCGGTATATTTAGACCGGTT
* * * * *
45027 ACATTGTTATTTTACCTATTACATTAT-ATCTATGTGATTCGATGTTTTTAGTATCGACACTTGT
131 ACATTGTTAATTTACCTATTACATTATAAT-TATGTGTTTCGATGTATTTAGGATCGACACATGT
45091 TATAAAT
195 TATAAAT
45098 GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
1 GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
* * * * * *
45163 TTGGATTTGTGGCGATACTTTATGTATACCTATTTTCTCATAAAACTGGTAAATTTAAACCGGTT
66 TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAAACCGGTATATTTAGACCGGTT
* * * *
45228 ACATTGTAAAGTGACCTATTACATTATAATTATAG-GTTTCGATGTATTTGGGATCGACACATGT
131 ACATTGTTAATTTACCTATTACATTATAATTAT-GTGTTTCGATGTATTTAGGATCGACACATGT
*
45292 CATAAAT
195 TATAAAT
* *
45299 GTATCGACACTTTTTTGTGCA-TTTGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
1 GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
* *
45363 TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACCGGTGTATTTAGGCCGGTT
66 TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAAACCGGTATATTTAGACCGGTT
* * ** **
45427 ACATTGTTATTTTACCTATTACATTAT-ATCTATGTGTTTCAATG-ATTTTAGTTTCGA-TGAT-
131 ACATTGTTAATTTACCTATTACATTATAAT-TATGTGTTTCGATGTA-TTTAGGATCGACACATG
45488 TT-T--A-
194 TTATAAAT
* *
45492 GTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGATACTTG
1 GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
* * * * *
45557 TTGGATTTATGTCGATACTTTATGTATACTTGTTCTCTCA-AAAACCTGTTTATTTAGA-CTGTT
66 TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAAACCGGTATATTTAGACCGGTT
* * * * * * *
45620 ACATTGTTAATTTACTTATTACATTATAATTATGTGTTTCGATGTTTTTGGGATTGATACTTATT
131 ACATTGTTAATTTACCTATTACATTATAATTATGTGTTTCGATGTATTTAGGATCGACACATGTT
45685 ATAAAT
196 ATAAAT
* * *
45691 GTATCGACACTTTTCTCGTGCACTTGGTTTAG-AAATACATTATGGACAACATGTATCGACAC
1 GTATCGACACTTTT-TCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACAC
45753 GAATGAATAA
Statistics
Matches: 746, Mismatches: 88, Indels: 42
0.85 0.10 0.05
Matches are distributed among these distances:
193 68 0.09
194 97 0.13
195 2 0.00
196 2 0.00
197 1 0.00
198 10 0.01
199 195 0.26
200 254 0.34
201 114 0.15
202 3 0.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (201 bp):
GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
TTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAAACCGGTATATTTAGACCGGTT
ACATTGTTAATTTACCTATTACATTATAATTATGTGTTTCGATGTATTTAGGATCGACACATGTT
ATAAAT
Found at i:45202 original size:400 final size:394
Alignment explanation
Indices: 44686--45752 Score: 1640
Period size: 400 Copynumber: 2.7 Consensus size: 394
44676 TCTATGTGAT
* * *
44686 TCGATGTTTTTAGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGAAAAAAAG
1 TCGATGATTTAAGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAG
44751 TATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAA
66 TATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAA
**
44816 TTTAAACTGGTTACATTGTAAAGTAACCTATTACATTATAATTATAGGTTTCGATGTATTCAGGA
131 TTTAAACTGGTTACATTGTAAAGTAACCTATTACATTATAATTATAGGTTTCGATGTATTTGGGA
44881 TCGACACATGTTATAAATGTATCGACACTTTTTTGTGCATTGGTTTGAAAAATACATTATGGACA
196 TCGACACATGTTATAAATGTATCGACACTTTTTTGTGCATTGGTTTGAAAAATACATTATGGACA
*
44946 AAAAGTATTGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGG
261 AAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGG
* *
45011 TGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCGATGTTTTT
326 TGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCAATGATTTT
45076 AGTA
391 AGTA
45080 TCGACACTTG-TTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGA
1 TCG--A--TGATT-T-AA-GTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGA
*
45144 CAAAAAGTATCGACACTTGTTGGATTTGTGGCGATACTTTATGTATACCTATTTTCTCATAAAAC
59 CAAAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACCTATTTTCTCATAAAAC
* * *
45209 TGGTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTATAGGTTTCGATGTA
124 CGGTAAATTTAAACTGGTTACATTGTAAAGTAACCTATTACATTATAATTATAGGTTTCGATGTA
* * *
45274 TTTGGGATCGACACATGTCATAAATGTATCGACACTTTTTTGTGCATTTGTTTGGAAAATACATT
189 TTTGGGATCGACACATGTTATAAATGTATCGACACTTTTTTGTGCATTGGTTTGAAAAATACATT
45339 ATGGACAAAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAT
254 ATGGACAAAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAT
*
45404 AAACCGGTGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCAA
319 AAACCGGTGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCAA
*
45469 TGATTTTAGTT
384 TGATTTTAGTA
* *
45480 TCGATGATTTTAGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAG
1 TCGATGATTTAAGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAG
* * * * * * **
45545 TATCGATACTTGTTGGATTTATGTCGATACTTTATGTATACTTGTTCTCTCA-AAAACCTGTTTA
66 TATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAA
* * * * * *
45609 TTTAGACT-GTTACATTGTTAATTTACTTATTACATTATAATTAT-GTGTTTCGATGTTTTTGGG
131 TTTAAACTGGTTACATTGTAAAGTAACCTATTACATTATAATTATAG-GTTTCGATGTATTTGGG
* * * * * *
45672 ATTGATACTTATTATAAATGTATCGACACTTTTCTCGTGCACTTGGTTT-AGAAATACATTATGG
195 ATCGACACATGTTATAAATGTATCGACACTTTT-TTGTGCA-TTGGTTTGAAAAATACATTATGG
* *
45736 ACAACATGTATCGACAC
258 ACAAAAAGTATCGACAC
45753 GAATGAATAA
Statistics
Matches: 616, Mismatches: 46, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
391 1 0.00
392 76 0.12
393 48 0.08
394 107 0.17
395 1 0.00
396 4 0.01
397 4 0.01
398 4 0.01
399 1 0.00
400 370 0.60
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (394 bp):
TCGATGATTTAAGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAG
TATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAA
TTTAAACTGGTTACATTGTAAAGTAACCTATTACATTATAATTATAGGTTTCGATGTATTTGGGA
TCGACACATGTTATAAATGTATCGACACTTTTTTGTGCATTGGTTTGAAAAATACATTATGGACA
AAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGG
TGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCAATGATTTT
AGTA
Found at i:45486 original size:15 final size:15
Alignment explanation
Indices: 45462--45498 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
45452 ATATCTATGT
*
45462 GTTTCAATGATTTTA
1 GTTTCGATGATTTTA
45477 GTTTCGATGATTTTA
1 GTTTCGATGATTTTA
*
45492 GTATCGA
1 GTTTCGA
45499 CACTTTGTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.24, C:0.08, G:0.19, T:0.49
Consensus pattern (15 bp):
GTTTCGATGATTTTA
Found at i:45988 original size:24 final size:24
Alignment explanation
Indices: 45937--45988 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
45927 ATTTACATTT
* *
45937 AAATTCAAACTCAAATTGAAATTT
1 AAATTCAAACTCAAATTGAAAATG
*
45961 AAATTCAAACTCTAATT-ATAAATG
1 AAATTCAAACTCAAATTGA-AAATG
45985 AAAT
1 AAAT
45989 GGAAATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATTCAAACTCAAATTGAAAATG
Found at i:45996 original size:11 final size:11
Alignment explanation
Indices: 45980--46016 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
45970 CTCTAATTAT
45980 AAATGAAATGG
1 AAATGAAATGG
45991 AAATGAAATGG
1 AAATGAAATGG
46002 AAATGAAAT-G
1 AAATGAAATGG
46012 AAATG
1 AAATG
46017 CCATGTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.23
11 20 0.77
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.19
Consensus pattern (11 bp):
AAATGAAATGG
Found at i:45998 original size:5 final size:5
Alignment explanation
Indices: 45980--46016 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
45970 CTCTAATTAT
45980 AAATG AAATGG AAATG AAATGG AAATG AAATG AAATG
1 AAATG AAAT-G AAATG AAAT-G AAATG AAATG AAATG
46017 CCATGTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 20 0.67
6 10 0.33
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.19
Consensus pattern (5 bp):
AAATG
Found at i:46009 original size:16 final size:15
Alignment explanation
Indices: 45980--46016 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 15
45970 CTCTAATTAT
45980 AAATGAAATGGAAATG
1 AAATGAAAT-GAAATG
45996 AAATGGAAATGAAATG
1 AAAT-GAAATGAAATG
46012 AAATG
1 AAATG
46017 CCATGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.05
16 14 0.70
17 5 0.25
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.19
Consensus pattern (15 bp):
AAATGAAATGAAATG
Found at i:49177 original size:199 final size:199
Alignment explanation
Indices: 48832--50154 Score: 2195
Period size: 199 Copynumber: 6.8 Consensus size: 199
48822 GTATAATTAT
* *
48832 ACTTGTTTTATTTGTGTCGATA-TTTTTTTACACCTGTTTTCTTAAAAACCGGTATATTTAGACC
1 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
*
48896 AGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
66 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
*
48961 TGTTATAAATGTATCGACACTTATTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
131 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
49026 CGAC
196 CGAC
* *
49030 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTTAAAAACTGGTATATTTAGACC
1 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
* *
49095 GGTTACATTGTTAATTTACCTATTACATTAAAATTTTGGGTTTCGATGTTTTTGGGATCGACACT
66 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
* * *
49160 TATTATAAATATATCGACACTTTTTTGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
131 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
*
49225 CAAC
196 CGAC
* * *
49229 ACTTGTTTTATTTGTGACGATACTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACT
1 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
*
49294 GGTTACATTGTTAATTTACCTATTACATTATAATTATAGGTTTC-ACTGTTTTTGGGATCGACAC
66 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA-TGTTTTTGGGATCGACAC
*
49358 TTGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTTTGGACCAAAAGTA
130 TTGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTA
49423 TCGAC
195 TCGAC
*
49428 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACT
1 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
49493 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
66 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
49558 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
131 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
*
49623 CGAT
196 CGAC
* * *
49627 ACTTATTTTATTTGTGTCGATATTTTTTGTACACCT-TTTTCTCAAAAA-CGATATATTTAGACC
1 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
49690 GGTTACATTGTTAATTTA-C-----C----T-ATTA------T-GATGTTTTTGGGATCGACACT
66 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
49737 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
131 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
*
49802 AGAC
196 CGAC
* *
49806 ACTTGTTTTATTTGTGTCGATACTTTTTGTAAACCTGTTTTCTCAAAAACCGGTATATTTAGACT
1 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
*
49871 GCTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
66 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
* *
49936 TGTTATAAATGCATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTAGACCAAAAGTAT
131 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
50001 CGAC
196 CGAC
* * *
50005 ACTTGTTTTATTTGTGTCGATATTTTTTGTACACCTGTTTTCTCAAAAACTGATATATTTAGACC
1 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
*
50070 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACT
66 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
50135 TGTTATAAATGTATCGACAC
131 TGTTATAAATGTATCGACAC
50155 ATAAGTTTAT
Statistics
Matches: 1051, Mismatches: 51, Indels: 45
0.92 0.04 0.04
Matches are distributed among these distances:
179 121 0.12
180 13 0.01
181 30 0.03
182 1 0.00
186 4 0.00
187 2 0.00
191 2 0.00
192 4 0.00
196 1 0.00
197 31 0.03
198 36 0.03
199 805 0.77
200 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (199 bp):
ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
CGAC
Found at i:50011 original size:577 final size:583
Alignment explanation
Indices: 48832--50154 Score: 2214
Period size: 577 Copynumber: 2.3 Consensus size: 583
48822 GTATAATTAT
* * *
48832 ACTTGTTTTATTTGTGTCGATATTTTTTTACACCTGTTTTCTTAAAAACCGGTATATTTAGACCA
1 ACTTGTTTTATTTGTGTCGATATTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCG
48897 GTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTT
66 GTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTT
48962 GTTATAAATGTATCGACACTTATTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATC
131 GTTATAAATGTATCGACACTTATTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATC
* * *
49027 GACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTTAAAAACTGGTATATTTAG
196 GACACTTATTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGATATATTTAG
49092 ACCGGTTACATTGTTAATTTACCTATTACATTAAAATTTTGGGTTTCGATGTTTTTGGGATCGAC
261 ACCGGTTACATTGTTAATTTACC--TTA-ATT--AA--------TTCGATGTTTTTGGGATCGAC
*
49157 ACTTATTATAAATATATCGACACTTTTTTGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAG
313 ACTTATTATAAATATATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAG
* *
49222 TATCAACACTTGTTTTATTTGTGACGATACTTTTTGTACACCTGTTTTCTCAAAAATCGGTATAT
378 TATCAACACTTGTTTTATTTGTGACGATACTTTTTGTAAACCTGTTTTCTCAAAAACCGGTATAT
*
49287 TTAGACTGGTTACATTGTTAATTTACCTATTACATTATAATTATAGGTTTCACTGTTTTTGGGAT
443 TTAGACTGCTTACATTGTTAATTTACCTATTACATTATAATTATAGGTTTCACTGTTTTTGGGAT
* * *
49352 CGACACTTGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTTTGGACCA
508 CGACACTTGTTATAAATGCATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTAGACCA
49417 AAAGTATCGAC
573 AAAGTATCGAC
*
49428 ACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACT
1 ACTTGTTTTATTTGTGTCGATA-TTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
49493 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
65 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
*
49558 TGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
130 TGTTATAAATGTATCGACACTTATTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT
* *
49623 CGATACTTATTTTATTTGTGTCGATATTTTTTGTACACCT-TTTTCTCAAAAAC-GATATATTTA
195 CGACACTTATTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGATATATTTA
*
49686 GACCGGTTACATTGTTAATTTACC-T-ATT-A-T-GATGTTTTTGGGATCGACACTTGTTATAAA
260 GACCGGTTACATTGTTAATTTACCTTAATTAATTCGATGTTTTTGGGATCGACACTTATTATAAA
*
49746 TGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTAT-AGACACTT
325 TATATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCA-ACACTT
*
49810 GTTTTATTTGTGTCGATACTTTTTGTAAACCTGTTTTCTCAAAAACCGGTATATTTAGACTGCTT
389 GTTTTATTTGTGACGATACTTTTTGTAAACCTGTTTTCTCAAAAACCGGTATATTTAGACTGCTT
*
49875 ACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA-TGTTTTTGGGATCGACACTTGT
454 ACATTGTTAATTTACCTATTACATTATAATTATAGGTTTC-ACTGTTTTTGGGATCGACACTTGT
49939 TATAAATGCATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTAGACCAAAAGTATCGA
518 TATAAATGCATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTAGACCAAAAGTATCGA
50004 C
583 C
* *
50005 ACTTGTTTTATTTGTGTCGATATTTTTTGTACACCTGTTTTCTCAAAAACTGATATATTTAGACC
1 ACTTGTTTTATTTGTGTCGATA-TTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACC
*
50070 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACT
65 GGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACT
50135 TGTTATAAATGTATCGACAC
130 TGTTATAAATGTATCGACAC
50155 ATAAGTTTAT
Statistics
Matches: 698, Mismatches: 26, Indels: 25
0.93 0.03 0.03
Matches are distributed among these distances:
576 1 0.00
577 419 0.60
578 2 0.00
587 1 0.00
590 3 0.00
592 1 0.00
595 33 0.05
596 34 0.05
597 204 0.29
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (583 bp):
ACTTGTTTTATTTGTGTCGATATTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCG
GTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTT
GTTATAAATGTATCGACACTTATTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATC
GACACTTATTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGATATATTTAG
ACCGGTTACATTGTTAATTTACCTTAATTAATTCGATGTTTTTGGGATCGACACTTATTATAAAT
ATATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCAACACTTGT
TTTATTTGTGACGATACTTTTTGTAAACCTGTTTTCTCAAAAACCGGTATATTTAGACTGCTTAC
ATTGTTAATTTACCTATTACATTATAATTATAGGTTTCACTGTTTTTGGGATCGACACTTGTTAT
AAATGCATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTAGACCAAAAGTATCGAC
Found at i:50551 original size:19 final size:19
Alignment explanation
Indices: 50527--50575 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
50517 TTACATTCAC
50527 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
50546 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
50565 ATACAAAATTA
1 ATACAAAATTA
50576 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:52489 original size:9 final size:9
Alignment explanation
Indices: 52472--52507 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
52462 TCCTTTTCCA
52472 CTGCCTCCT
1 CTGCCTCCT
*
52481 CTGCTTCCT
1 CTGCCTCCT
52490 CTGCCTCCT
1 CTGCCTCCT
*
52499 CTACCTCCT
1 CTGCCTCCT
52508 TGATAATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.03, C:0.53, G:0.08, T:0.36
Consensus pattern (9 bp):
CTGCCTCCT
Found at i:54110 original size:19 final size:19
Alignment explanation
Indices: 53992--54109 Score: 83
Period size: 19 Copynumber: 5.9 Consensus size: 19
53982 CATTTATATA
*
53992 ACCTAAAATATCATTTTCT
1 ACCTATAATATCATTTTCT
* *
54011 ACCTATAATATTATATTATAT
1 ACCTATAATATCAT-TT-TCT
* * *
54032 ACATGTATCCATATTTATTTTCT
1 AC--CTAT-AATA-TCATTTTCT
* *
54055 ACCTAGAATATCACTTTCT
1 ACCTATAATATCATTTTCT
* * *
54074 ACATGTAATATCATTTTTT
1 ACCTATAATATCATTTTCT
54093 ACCTATAATATCATTTT
1 ACCTATAATATCATTTT
54110 TGTTTACCTA
Statistics
Matches: 75, Mismatches: 18, Indels: 12
0.71 0.17 0.11
Matches are distributed among these distances:
19 48 0.64
20 5 0.07
21 6 0.08
23 7 0.09
24 5 0.07
25 4 0.05
ACGTcount: A:0.34, C:0.17, G:0.03, T:0.47
Consensus pattern (19 bp):
ACCTATAATATCATTTTCT
Found at i:54118 original size:22 final size:19
Alignment explanation
Indices: 54048--54125 Score: 75
Period size: 19 Copynumber: 3.9 Consensus size: 19
54038 ATCCATATTT
* *
54048 ATTTTCTACCTAGAATATC
1 ATTTTTTACCTATAATATC
* * * *
54067 ACTTTCTACATGTAATATC
1 ATTTTTTACCTATAATATC
54086 ATTTTTTACCTATAATATC
1 ATTTTTTACCTATAATATC
54105 ATTTTTGTTTACCTATAATAT
1 A--TTT-TTTACCTATAATAT
54126 TAAATAAAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
19 31 0.65
21 3 0.06
22 14 0.29
ACGTcount: A:0.31, C:0.17, G:0.04, T:0.49
Consensus pattern (19 bp):
ATTTTTTACCTATAATATC
Done.