Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006924.1 Hibiscus syriacus cultivar Beakdansim tig00017760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78934

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1548--1792
4
61.2
4
90
0
346
24
6
25
43
1.78
8191--8228
2
19.0
2
100
0
76
50
0
0
50
1.00
8962--8989
2
14.0
2
100
0
56
0
50
0
50
1.00
17376--17443
25
2.8
24
79
20
79
44
4
0
51
1.21
17385--17443
22
2.5
23
84
10
84
44
5
0
50
1.24
26836--26875
19
2.1
19
100
0
80
37
10
15
37
1.80
32287--32321
18
1.9
18
88
0
52
80
2
0
17
0.84
32789--32826
18
2.1
18
85
9
51
60
2
7
28
1.38
33814--33944
62
2.1
62
82
2
156
27
13
37
21
1.91
34225--34270
3
16.3
3
82
8
53
69
0
0
30
0.89
34228--34270
23
1.9
22
90
4
68
69
0
0
30
0.88
34392--34956
123
4.6
123
93
0
914
25
19
16
39
1.92
35170--35259
39
2.3
39
88
0
126
37
18
14
28
1.91
36458--36654
51
3.8
51
87
0
277
22
22
17
37
1.94
38190--38273
8
10.9
8
80
5
93
1
16
1
80
0.83
38191--38274
31
2.8
30
80
7
91
1
17
1
79
0.86
41692--41784
46
2.0
47
87
6
136
34
19
11
34
1.88
44091--44229
62
2.2
62
84
2
181
23
17
41
17
1.90
44504--44543
3
14.3
3
85
15
59
67
0
0
32
0.91
44505--44542
8
5.0
8
81
12
53
71
0
0
28
0.87
44504--44543
11
3.6
11
83
12
55
67
0
0
32
0.91
44508--44543
14
2.6
14
95
4
65
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45257--45314
30
1.9
30
85
0
80
36
6
22
34
1.81
46338--46369
2
16.0
2
100
0
64
0
50
0
50
1.00
46369--46401
2
16.5
2
100
0
66
48
0
0
51
1.00
53582--53660
3
24.3
3
85
10
70
34
2
1
62
1.17
54480--54521
17
2.4
17
80
11
50
47
0
0
52
1.00
56723--56780
27
2.1
27
90
0
89
37
17
13
31
1.89
57199--57248
23
2.2
23
82
7
57
54
2
4
40
1.31
58189--58245
25
2.2
25
75
12
62
40
8
0
50
1.33
58175--58246
24
2.9
25
76
12
69
43
8
0
48
1.33
58232--58283
26
1.9
28
81
14
65
30
7
1
59
1.36
58196--58361
29
6.0
28
69
16
105
37
10
0
51
1.41
58410--58563
56
2.8
56
74
12
147
50
0
11
38
1.38
58453--58551
26
3.6
27
86
4
110
46
0
14
39
1.44
58542--58631
28
3.4
25
76
19
85
51
0
8
40
1.33
58542--58621
25
3.1
25
79
13
81
52
0
6
41
1.27
66876--66908
16
2.1
16
88
5
50
48
9
0
42
1.35
71606--71687
41
2.0
41
87
0
119
45
15
14
24
1.84
71814--71879
18
3.7
18
79
0
69
42
15
10
31
1.81

Tables:   1

The End!