genome.fa.s6925.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006925.1 Hibiscus syriacus cultivar Beakdansim tig00017764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97326

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3609--3681	17	4.2	17	76	10	67	34	9	12	43	1.75
3651--3697	17	2.8	17	86	0	58	38	6	17	38	1.75
8090--8150	20	2.9	21	85	7	70	16	26	32	24	1.96
14752--14912	81	2.0	81	86	2	225	26	24	12	36	1.91
14863--15191	67	4.7	67	72	11	284	30	23	13	33	1.92
14766--15190	214	2.0	215	90	3	669	29	23	12	34	1.92
14930--15352	147	2.9	147	89	0	630	29	22	11	36	1.89
15513--15682	57	3.0	57	92	0	286	35	19	8	36	1.83
16029--16069	19	2.2	19	95	0	73	29	24	14	31	1.95
16093--16161	20	3.6	19	75	13	70	20	31	15	31	1.94
16093--16136	18	2.3	20	84	7	56	18	31	18	31	1.95
18806--18866	25	2.4	25	83	5	79	22	4	3	68	1.23
26807--26857	25	2.0	25	92	0	84	11	7	23	56	1.61
26859--26890	6	5.5	6	96	3	57	15	0	0	84	0.63
26922--27335	208	2.0	208	98	0	792	40	13	7	38	1.73
30832--31224	207	1.9	200	86	4	554	34	8	22	34	1.85
31784--31837	2	27.0	2	100	0	108	50	0	0	50	1.00
32181--32233	20	2.7	20	84	0	70	26	24	20	28	1.99
34103--34147	18	2.5	18	88	0	72	26	44	15	13	1.83
34623--34668	20	2.3	20	88	0	65	39	23	19	17	1.92
34662--34758	19	5.6	19	71	22	97	45	20	20	13	1.85
34678--34734	14	3.7	14	75	20	60	50	22	15	10	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34662--34753	33	2.8	33	98	0	175	46	20	19	13	1.83
34770--34845	14	4.7	15	76	20	57	10	18	23	47	1.79
34765--34904	19	7.9	18	73	17	107	12	20	23	44	1.85
34765--34882	51	2.3	52	88	2	175	11	20	23	44	1.85
34847--34902	20	2.8	20	86	7	71	16	23	23	37	1.93
35268--35355	41	2.1	42	85	2	124	21	43	14	20	1.88
36765--36803	14	2.8	14	84	0	51	35	0	17	46	1.49
36899--36937	20	2.0	20	94	0	69	46	30	10	12	1.75
36940--37007	19	3.8	19	81	14	92	47	16	22	14	1.82
37026--37121	20	4.8	20	76	10	88	17	21	19	40	1.91
37026--37112	40	2.2	41	79	6	97	18	21	18	41	1.90
37412--37486	21	3.6	21	96	0	141	24	22	14	38	1.92
37702--37731	12	2.5	12	88	0	51	20	40	6	33	1.78
38492--38516	12	2.1	12	100	0	50	72	0	28	0	0.86
40480--40537	19	3.3	19	68	22	63	44	17	22	15	1.86
40543--40601	19	3.4	18	68	22	54	13	22	18	45	1.84
40708--40744	14	2.6	14	91	0	65	45	24	0	29	1.53
42098--42164	21	3.2	21	68	4	55	19	20	35	23	1.95
42098--42220	42	2.9	41	79	7	113	22	18	36	21	1.95
42438--42621	90	2.0	90	88	7	273	47	17	12	22	1.81
44308--44429	20	6.8	19	69	20	84	43	20	23	12	1.86
44357--44412	14	3.6	14	74	21	58	39	25	25	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44333--44429	33	2.9	33	95	1	167	41	22	24	11	1.87
44430--44474	19	2.4	19	92	0	72	8	15	26	48	1.74
45029--45082	20	2.7	19	82	5	54	22	18	22	37	1.95
45090--45161	20	3.5	21	75	5	76	37	16	23	22	1.94
45171--45222	20	2.5	21	87	3	70	21	23	17	38	1.93
45090--45237	41	3.6	41	74	8	99	31	18	21	28	1.97
45212--45264	21	2.5	22	81	6	74	33	18	26	20	1.96
51003--51041	20	2.0	20	100	0	78	41	15	10	33	1.81
55640--55681	21	2.0	20	86	4	57	40	16	4	38	1.70
56140--56197	20	2.9	20	94	0	107	25	31	27	15	1.96
56138--56256	10	11.3	10	66	10	58	25	26	35	13	1.93
56200--56268	33	2.1	33	91	5	113	26	24	40	8	1.84
56398--56454	29	2.0	29	100	0	114	19	31	35	14	1.91
59059--59106	2	24.0	2	86	0	69	56	0	0	43	0.99
59388--59453	28	2.4	28	84	5	89	31	13	1	53	1.49
59964--60028	29	2.2	28	78	7	76	38	4	20	36	1.73
67022--67062	13	3.1	13	92	3	64	36	14	7	41	1.74
69141--69201	22	2.8	22	85	2	88	21	37	19	21	1.94
70201--70448	124	2.0	124	98	0	478	43	8	13	33	1.74
71814--71887	34	2.3	32	84	9	89	36	4	1	58	1.26
72018--72052	17	2.0	18	88	5	54	71	0	0	28	0.86
73724--73765	20	2.1	20	86	8	59	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73994--74050	3	19.3	3	92	3	98	64	1	0	33	1.04
74149--74194	15	3.1	15	75	18	51	36	2	2	58	1.22
75362--75414	26	2.0	26	88	0	79	26	11	22	39	1.88
75672--75743	34	2.1	34	97	0	135	65	15	9	9	1.47
76904--76940	17	2.2	17	100	0	74	35	10	16	37	1.83
79663--79696	18	1.9	17	88	5	50	64	0	2	32	1.08
79766--79815	17	2.9	17	75	18	50	44	8	0	48	1.32
79882--79964	35	2.3	37	83	10	125	37	3	3	55	1.35
82163--82196	6	5.7	6	96	0	59	35	11	50	2	1.54
84379--84474	45	2.1	45	96	0	174	25	13	9	52	1.70
85012--85117	52	2.0	52	100	0	212	42	10	16	30	1.82
86273--86643	194	1.9	192	89	2	573	19	18	17	44	1.87

Tables:   1

The End!