genome.fa.s6926.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006926.1 Hibiscus syriacus cultivar Beakdansim tig00017766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66036

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326--359	15	2.2	16	89	5	52	67	0	2	29	1.05
4407--4436	12	2.5	12	100	0	60	40	36	0	23	1.55
4556--4606	26	2.0	26	100	0	102	50	17	3	27	1.63
6686--6729	21	2.0	23	86	8	65	47	0	4	47	1.22
9140--9182	21	2.0	21	91	8	70	53	0	2	44	1.13
9176--9219	19	2.2	20	84	4	54	56	0	0	43	0.99
9243--9267	13	1.9	13	100	0	50	48	4	0	48	1.20
9599--9627	13	2.1	14	93	6	51	51	0	0	48	1.00
9195--9966	351	2.2	359	86	7	1074	45	8	8	37	1.66
9872--9970	26	3.9	26	71	16	91	52	0	3	44	1.16
9863--9965	34	2.9	34	79	12	102	52	0	2	44	1.16
9876--9964	25	3.5	26	72	18	89	50	0	3	46	1.18
9988--10033	23	2.0	21	88	12	65	45	4	0	50	1.21
16642--16692	26	2.0	26	84	0	66	49	21	1	27	1.60
17995--18049	26	2.1	26	86	0	74	49	20	3	27	1.65
18169--18236	26	2.6	27	78	15	72	42	1	1	54	1.18
20353--20396	21	2.0	23	86	8	65	47	0	6	45	1.29
24761--26757	664	3.0	664	98	0	3805	43	13	18	24	1.86
30686--30750	23	2.8	23	85	0	94	29	13	21	35	1.92
33047--33368	7	43.4	7	80	15	284	0	25	58	15	1.39
33089--33142	27	2.0	27	89	3	83	1	24	62	11	1.37
33113--33155	17	2.6	17	88	3	61	2	25	60	11	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33082--33368	58	5.5	52	80	18	278	0	25	59	13	1.37
33076--33368	65	4.6	60	78	19	260	0	25	59	13	1.37
33069--33544	14	34.2	14	87	11	216	5	21	53	19	1.65
33338--33543	7	29.4	7	97	0	358	12	16	44	27	1.82
38638--38702	23	2.8	23	85	0	94	29	13	21	35	1.92
40982--41337	7	50.4	7	88	10	435	0	24	60	15	1.35
41335--66036	7	3611.0	7	95	4	44527	14	0	43	41	1.45

Tables:   1

The End!