genome.fa.s6928.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006928.1 Hibiscus syriacus cultivar Beakdansim tig00017775_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127706

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--46	20	2.1	20	100	0	84	23	38	23	14	1.92
270--316	12	3.9	12	82	0	67	51	17	19	12	1.77
364--430	2	34.5	2	79	11	68	41	1	2	53	1.25
1873--1915	17	2.7	17	82	13	56	16	11	0	72	1.13
1965--1992	3	9.3	3	100	0	56	32	0	0	67	0.91
1988--2073	17	4.9	17	72	20	61	15	12	2	69	1.28
2020--2064	19	2.2	20	84	11	56	15	15	2	66	1.35
3898--3956	13	4.7	13	73	21	54	5	10	23	61	1.48
6527--6783	95	2.7	95	81	7	288	35	15	16	32	1.91
7937--8016	21	4.0	21	72	20	82	27	18	12	41	1.87
7949--8317	36	10.4	36	75	15	340	27	20	12	39	1.89
8168--8232	21	3.4	21	68	24	70	24	21	12	41	1.87
8060--8317	78	3.6	72	81	11	244	27	20	12	39	1.89
8193--8385	66	2.9	65	81	10	230	27	23	13	34	1.93
8846--8965	41	2.9	42	82	8	154	33	28	15	22	1.95
11063--11143	3	27.0	3	97	0	153	32	0	1	66	0.99
11409--11441	17	2.0	16	94	5	57	30	0	0	69	0.88
11408--11464	17	3.2	16	75	22	51	22	7	0	70	1.11
11541--11598	3	19.3	3	100	0	116	32	0	0	67	0.91
11594--11700	45	2.4	43	80	11	119	15	13	0	70	1.23
15440--15486	12	3.9	12	80	0	58	53	17	14	14	1.74
15440--15498	24	2.5	24	82	0	73	52	16	16	13	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16815--16842	14	2.0	14	100	0	56	21	14	42	21	1.88
17750--17835	2	43.5	2	97	2	165	50	0	0	50	1.00
19210--19249	14	2.8	15	78	21	50	40	0	0	60	0.97
21655--21688	13	2.6	13	85	0	50	47	14	11	26	1.79
25838--25880	21	2.1	20	87	12	61	20	6	0	72	1.08
26209--26244	16	2.2	16	90	0	54	11	0	13	75	1.06
31719--31762	16	2.8	16	82	3	54	63	0	0	36	0.95
31713--31772	27	2.3	25	85	5	75	66	3	0	30	1.07
32473--32526	21	2.6	21	90	0	90	27	16	25	29	1.97
32515--32702	20	9.6	20	70	18	103	15	21	22	39	1.91
32558--32629	22	3.4	22	73	11	87	18	18	25	38	1.92
32538--32647	41	2.7	41	90	4	168	17	19	23	40	1.91
32518--32642	22	6.0	22	68	9	68	16	20	22	41	1.90
32581--32647	19	3.4	19	68	11	53	19	16	22	41	1.90
33511--33603	22	4.4	22	74	9	95	36	24	18	20	1.95
33614--33687	21	3.6	21	68	3	69	35	25	18	20	1.96
33552--33707	81	1.9	81	84	10	212	38	23	20	17	1.93
33595--33731	20	6.8	20	74	4	132	40	22	21	15	1.91
33552--33703	41	3.8	41	87	7	197	38	23	19	18	1.93
33735--34269	268	2.0	268	98	0	1043	35	12	14	38	1.83
36529--36564	17	2.1	17	90	10	56	58	0	0	41	0.98
37593--37656	31	2.1	30	82	8	76	42	4	0	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37607--37665	31	1.9	31	89	6	93	42	0	1	55	1.09
38474--38515	20	2.0	21	86	13	59	50	4	2	42	1.36
39873--39900	7	4.0	7	100	0	56	14	0	0	85	0.59
39989--40020	16	2.0	16	93	0	55	28	3	0	68	1.04
47219--47280	27	2.3	27	82	0	70	19	4	29	46	1.70
48243--48317	20	3.8	20	78	7	89	20	22	26	30	1.98
48243--48325	40	2.1	40	86	0	112	20	24	25	30	1.99
52112--52179	21	3.0	22	89	8	93	22	7	16	54	1.66
75717--75764	21	2.3	20	80	19	55	66	4	0	29	1.10
79749--79795	19	2.6	18	83	9	60	72	2	2	23	1.06
79860--79899	2	20.5	2	94	5	73	47	0	0	52	1.00
79801--79875	36	2.0	37	89	5	116	46	9	0	44	1.35
79824--79936	59	1.9	57	84	10	149	46	5	2	46	1.39
79879--80019	39	3.7	38	87	4	194	43	6	4	46	1.49
79930--79982	28	1.9	28	88	3	81	43	5	3	47	1.45
84910--84937	3	9.3	3	100	0	56	32	0	0	67	0.91
88771--88851	29	2.8	29	94	3	137	16	22	17	44	1.86
89228--89384	64	2.5	64	79	6	167	28	17	19	34	1.95
93341--93386	23	2.0	23	91	0	74	28	26	23	21	1.99
93364--93667	149	2.0	149	98	0	581	35	20	15	27	1.94
94123--94281	63	2.5	63	86	2	203	27	22	18	32	1.97
100385--100430	23	2.0	23	86	0	65	30	26	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100408--100709	149	2.0	149	98	0	586	35	21	15	27	1.93
101167--101325	63	2.5	63	85	2	194	27	22	18	32	1.97
101293--101330	19	2.0	20	94	5	69	26	28	15	28	1.96
105042--105122	29	2.8	29	96	3	146	17	22	16	44	1.86
105499--105655	64	2.5	64	80	8	176	28	18	19	33	1.96
110297--110327	16	1.9	16	100	0	62	12	9	0	77	0.99
110299--110335	16	2.2	16	90	4	56	13	10	0	75	1.04
113999--114055	7	7.7	7	88	7	78	78	1	19	0	0.83
113999--114055	15	3.9	14	86	11	78	78	1	19	0	0.83
115199--115406	110	1.9	106	82	7	258	35	25	16	23	1.95
117432--117478	4	11.5	4	86	13	69	23	4	0	72	1.02
119369--119411	2	21.5	2	100	0	86	48	0	0	51	1.00

Tables:   1

The End!