genome.fa.s6929.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006929.1 Hibiscus syriacus cultivar Beakdansim tig00017783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63884

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794--827	2	17.5	2	93	6	61	47	0	0	52	1.00
1835--1907	26	2.8	25	84	12	94	34	1	0	64	1.02
1835--1893	3	19.3	3	89	10	93	33	0	0	66	0.92
2454--2562	34	3.2	34	100	0	218	47	29	20	2	1.64
3333--3402	26	2.6	26	82	8	70	32	8	4	54	1.50
3450--3477	14	2.0	14	100	0	56	42	0	7	50	1.30
3470--3531	27	2.2	28	81	10	74	37	0	1	61	1.06
4387--4420	16	2.2	15	89	5	50	35	8	0	55	1.31
5906--5946	7	6.0	7	86	13	59	14	17	12	56	1.68
11475--11636	75	2.2	75	86	4	220	30	17	21	30	1.96
12462--12503	22	1.9	22	95	0	75	40	14	7	38	1.73
12881--13317	113	3.8	113	83	6	483	39	14	19	26	1.90
13670--13751	16	4.8	17	81	12	89	34	1	0	64	1.01
13672--13751	22	4.0	20	75	13	76	35	1	0	63	1.02
13672--13751	19	4.0	21	76	18	82	35	1	0	63	1.02
13672--13737	3	22.0	3	82	11	82	34	0	0	65	0.93
14149--14196	21	2.3	21	92	0	78	18	35	22	22	1.96
14920--14952	15	2.2	15	94	0	57	33	9	3	54	1.47
15088--15157	26	2.6	26	82	8	70	32	8	4	54	1.50
15206--15233	14	2.0	14	100	0	56	42	0	7	50	1.30
15237--15302	27	2.4	28	82	12	84	40	0	1	57	1.08
18537--18606	31	2.2	32	82	7	90	24	21	1	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19597--19629	2	16.5	2	100	0	66	51	0	0	48	1.00
21050--21074	13	1.9	13	100	0	50	40	40	0	20	1.52
23131--23194	31	2.1	31	85	11	87	50	18	15	15	1.79
23548--23598	2	25.5	2	95	0	93	49	0	1	49	1.12
28412--28452	18	2.3	19	79	12	50	34	21	0	43	1.53
30418--31490	4	269.2	4	99	0	2118	49	24	0	25	1.50
34464--34534	32	2.2	32	94	0	124	46	4	14	35	1.64
36216--36257	18	2.3	19	79	4	50	23	2	2	71	1.10
36206--36256	19	2.6	19	80	20	52	23	1	1	72	1.05
41238--41281	20	2.2	20	100	0	88	47	11	22	18	1.80
43186--43378	20	9.6	20	85	5	246	34	27	19	18	1.95
43943--44128	20	9.3	20	85	4	232	35	27	17	19	1.94
44820--44866	24	2.0	24	87	8	69	25	14	21	38	1.92
47349--47558	72	2.9	72	84	5	264	46	17	21	14	1.84
47335--47552	53	4.1	52	85	10	293	46	17	22	13	1.83
47548--47664	52	2.2	52	95	4	209	13	24	17	43	1.86
47567--47664	19	5.4	19	82	15	127	14	23	17	44	1.85
47771--47807	14	2.6	14	91	0	65	45	21	0	32	1.52
49724--49896	19	9.6	19	75	12	141	45	22	20	11	1.83
49818--49874	14	3.7	14	75	20	51	43	22	22	10	1.84
49799--49891	33	2.8	33	95	0	168	46	21	21	10	1.81
49758--49896	52	2.7	52	74	8	147	46	21	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49886--49949	18	3.8	18	74	19	66	10	15	29	43	1.81
49892--49976	31	2.7	31	85	7	93	10	14	30	44	1.78
51837--51933	20	5.2	20	72	18	100	45	17	24	12	1.83
51884--51940	14	3.7	14	75	20	60	43	22	24	8	1.81
51835--51957	33	3.5	33	88	10	165	45	18	24	11	1.82
51982--52057	21	3.7	21	77	8	84	13	21	17	48	1.80
52137--52207	33	2.2	33	97	0	133	47	18	23	9	1.78
52159--52207	14	2.8	19	65	28	54	46	20	24	8	1.77
52141--52197	14	3.7	14	70	20	51	45	21	24	8	1.80
52587--52779	20	9.6	20	84	5	237	19	19	26	34	1.95
54063--54110	24	2.0	24	95	0	87	27	18	16	37	1.92
59346--59375	15	2.0	15	93	0	51	46	3	13	36	1.60
60581--60621	20	2.0	21	85	4	57	75	0	7	17	1.02
61792--61852	3	19.3	3	80	6	59	67	0	0	32	0.91
61776--61852	32	2.4	32	78	4	84	71	0	1	27	0.94

Tables:   1

The End!