genome.fa.s693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000693.1 Hibiscus syriacus cultivar Beakdansim tig00001350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116577

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9145--9188	14	2.9	16	80	19	58	29	0	0	70	0.88
9176--9276	51	2.0	52	90	5	161	38	2	3	54	1.34
14948--14979	5	6.2	5	92	7	55	81	0	0	18	0.70
17544--17587	22	2.0	22	95	0	79	54	11	9	25	1.65
18534--18813	137	2.0	136	85	4	384	47	5	17	30	1.70
18681--18971	157	1.9	157	87	2	433	48	5	14	31	1.67
19653--19703	23	2.2	23	92	0	84	15	23	11	49	1.78
19661--19714	23	2.4	23	87	3	74	18	20	11	50	1.77
24787--24815	15	1.9	15	100	0	58	48	6	6	37	1.57
27040--27083	3	14.7	3	100	0	88	65	0	0	34	0.93
27082--27109	3	9.3	3	100	0	56	35	0	0	64	0.94
27405--27471	33	2.0	33	94	0	116	47	8	8	34	1.66
28675--28716	3	14.0	3	100	0	84	66	0	0	33	0.92
29542--29594	27	2.1	26	82	10	65	43	0	11	45	1.40
31353--31423	22	3.2	22	90	6	108	28	23	12	35	1.92
31413--31507	49	1.9	50	91	2	156	41	16	15	26	1.89
31423--31522	49	2.0	49	86	0	137	42	19	14	25	1.88
31657--31698	22	1.9	22	85	0	57	28	9	26	35	1.88
32767--32808	22	1.9	22	85	0	57	33	2	2	61	1.21
35309--35354	17	2.6	17	96	3	83	4	10	28	56	1.53
43339--43380	18	2.4	18	92	4	68	14	7	23	54	1.64
47244--47590	55	6.3	55	83	1	363	31	23	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47240--47579	110	3.1	110	83	1	414	31	24	13	30	1.94
47601--48391	51	15.5	51	81	9	705	25	25	17	31	1.97
47693--47868	90	2.0	90	88	2	264	27	22	18	32	1.97
47803--48391	105	5.7	105	84	6	629	24	26	17	31	1.97
59374--59421	25	1.9	25	91	0	78	37	27	8	27	1.85
65540--65585	21	2.1	22	88	4	67	47	6	10	34	1.64
66704--66751	19	2.5	20	82	3	62	31	12	4	52	1.58
67501--67571	34	2.1	34	84	2	90	25	28	14	32	1.94
75692--75748	17	3.4	17	90	4	98	24	22	17	35	1.95
76530--76563	17	2.0	17	88	0	50	64	2	29	2	1.22
85790--85866	39	1.9	38	87	7	109	10	19	3	66	1.38
94670--94709	21	2.0	20	90	5	62	65	5	12	17	1.44
97635--97808	90	1.9	91	89	1	269	22	26	22	28	1.99
99582--99786	94	2.2	95	87	2	288	28	25	15	30	1.95
110292--110321	15	1.9	16	93	6	53	46	13	20	20	1.83
110152--110339	79	2.4	80	83	3	220	33	19	18	29	1.95
110409--110556	44	3.4	44	67	12	126	32	24	16	26	1.96
110412--110607	85	2.3	85	85	1	268	33	23	17	24	1.96
113444--113485	21	2.0	21	95	0	75	26	28	21	23	1.99
113560--113608	19	2.6	19	93	0	80	36	12	8	42	1.72
113673--113732	29	2.0	31	90	6	97	41	20	6	31	1.78
114060--114111	23	2.3	23	96	0	95	34	17	9	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114981--115028	19	2.5	20	82	3	62	29	12	6	52	1.63
116214--116255	21	2.0	21	90	0	66	28	28	19	23	1.98
116358--116423	19	3.5	19	82	0	69	34	12	12	40	1.80
116486--116547	30	2.0	30	84	6	79	45	14	4	35	1.66

Tables:   1

The End!